YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ten-1
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQHRTTNAQ GPPPNRPMPR PPAGMPMMTS SHEHDYTNDY EDPEEMARSR GEGFSNHLLI  60
   61 KTTPPPQPHP NFNSYEMSMS QQRRSQQHQQ PMAPPLSDCW GSGVHDSGVL HKNADGAYYI 120
  121 PSGSLRTTSS TLSPASGQRY LDQPHTSGGA PNPTYSDAST TLLKYPLAAG TNQNRRRQQV 180
  181 GTMNNGDPVA GGPMALSKKK KKFDDDSDTC SRWPSKWNIL LAAALLVALF VICILLFRAP 240
  241 NYVYTQPAPS SDATSSAAAA ASRYQDLGLR ALPPAISLGE RVDVEFFPKS MATTELTVTK 300
  301 PSRIRFNATV GSGAQLVLLM SAGVHPSLSL HDALFPIRAD RIRDSKSPTH IVEEFGSRSR 360
  361 RSLGASSSRH RNIEILSPRS ATFEQFVLEG RHYLTFINER SRVEPISFVA EELQRPTTPP 420
  421 KTSSSGTSGA KEHPLASVLV CESNCNQRGE CVHGKCHCAP GFTGRTCDEA VCPVVCSGNG 480
  481 VFSGGICVCK SGFKGKECEM RHNWCEVADC NGRGRCDTDG RCRCNPGWTG EACELRACPH 540
  541 ASCHDRGVCV NGTCYCMDGW RGNDCSVFAD AIVHVPQAQS PPRRGQEPTE SSKTRKAQVK 600
  601 PTPTSEKKKE SRELQKPIIA TVQVPTESSH PCSAHGQLID DICQCESGWD SVDCSQQACQ 660
  661 CVNGDCLDDG SCQCWKGWRG SNCTDKKCAI GCEDRGKCAS DGSCKCSSGW NGENCAIDGC 720
  721 PNQCSGKGEC GMDRRSSEWS CRCQAGSTGV DCSVSVEMHC DDGLDNDSDG LIDCDDPECC 780
  781 SSSSCSSESV CSTAASPIEV LMRMPPIFNA NFAQRVGFLI MEKSVQSYTD SSQFNENLIS 840
  841 VIRGRVMWGG SPTGSDDLST YSNKSTVPLV GVRVSDAAHP LYGFTLTRED GYFDLTVNGA 900
  901 RSVTLQFLRT QFQSVKKSVF VSPRQIIHID DIVLYRQSGG SPPAISMAPA RAKCSPTLRR 960
  961 IPDVVLISNW QYTSDGIETD ETSDSSRIVV DSRSIFESLP IQGTDVRLVY DSARSPAAPS1020
 1021 TMLIGLLYDR VDKELRKVHI NIRIAGRRFD RVLAPRTNLT YVFAWDKMNA YRQSESGLVP1080
 1081 VTVRVGYEYQ GCDRTSERVW QTRRSQMMGA TARKMIGTMW TLDIHHHLDI VNNVVEMGNG1140
 1141 GYRLITESEP RVSTFAGLDG VKRDVECLKC EGKVDSISLF RPTTVVYAQD GSLIIGDHNM1200
 1201 IRRVSQDGQV STILTLGLAD TSHSYYIAVS PVDGTIAISL PLHKQVWRIS SLEPQDSRNN1260
 1261 YDVLAGDGTV CASAVDSCGD GALAQNAQLI FPKGISFDKM GNLYLADSRR IRVIDTTGHI1320
 1321 RSIGETTPDQ HPIRTCAQIT KLVDLQMEWP TSLTIDPITG SVLVLDTNVV YEIDVVHDVV1380
 1381 TIALGSPTTC DLANATSSAS AKSLDHRRHL IQNARDITVG TDGAIYVVES DGRRLNQVRK1440
 1441 LSSDRSTFSI LTGGKSPCSC DVAACGCDDA VSLRDVAASQ AHLSSPYAVC VSPSGDVIIA1500
 1501 DSGNSKIKKV SARMAKYDGR SRTYEVTDAE RQEKYTFNRH GQHSSTVSLI TGRTFFNFSY1560
 1561 QVDSPISMIS EIRAASGVVL RVLKRNDSLF DLETTLGQRT TLTMSAYDGT LEQVSKRDSA1620
 1621 TSRDATKLFY KKGLLTSRID VATAVGFEYD EYGRAIGLKR DREYWRLGEE TISMGSVNTE1680
 1681 VLLNGQRFQQ VRLGEGNLAV HSTNGATTRL ISLRNEGYSL ASPLGTSTLY DKSSSIPDSN1740
 1741 GEPLISRRRT KVPAIGNPQR RELTTRWDWR HVARRGDDSD GSLGRRKVAE INGVNMFSME1800
 1801 YDVKSNQDTL RLGSTTDDAQ ALLFIDYTSS GRIRRISAPE DSQMAEMNIT WDGAGRKSEV1860
 1861 TWGSWKIRLT YDNSNRLTEH AIDGARVPIK MSYAGASRRP NEIQHDGAKW NIQYDNYDRI1920
 1921 KEVISKSQEA TSFSSIALGG DEWVLKRRTS LNSKPSLVRL SREGKVLEST TPDENHYWLE1980
 1981 RKDPITGRTT EILNDEETTV VTCWSPEGAP MCSRSRNLQE NTTMQGHLVA RKSVTIMTPT2040
 2041 SSEPSITSSF TYEYDDMLRV TTIQPVIEQS VLESIQLSYD ERRGHVAAIN GFKWARDAST2100
 2101 SRCQGHGLMY ETSKANDHRQ VVERKLIFGD ARASIKIIRD KAGRASESHL EISSSGTQRN2160
 2161 QKITRTFDAA GRVASVEQND QEPVRIIWNS DARVEKINDR VVEWNRGGAL KTFQDISYQV2220
 2221 DSIGWVVKRD NTTVFGYDGK GRLVSARSSQ LRINIFYDRE DRVVQIQNSK DFIHFYYGYI2280
 2281 DTPKLVSHFS KNGKISTLFY DDDSVPFAMQ SDDGTRYALL TDETSTIKAI IGDSNVLRII2340
 2341 DRSVFGALLP SSSSSHPFLP IGYLGGIEIS EISVSILNNG RPLDLYSERY MSISPEAVVR2400
 2401 LELNEKFSNS IDLMALEIDR QPFRVENVPE DFETWFSLAG LSPNLLPSAH LGLPASSAIV2460
 2461 HRLLSSFPRK LRPLTHLTTV LPTRLASDIS LTSPTSETSW SIDDVGFSNL LILNEDATTG2520
 2521 EVMVEMLSDL KSEEREVISK LFDGVKSLDF ATWGLVPTRH LWRAPNSKLE LSSTSFSHFT2580
 2581 MAVNKDSVEL RNGKSKIVVH FSENKAEIVK KIVEELKTRE NIAVWRAERK RAEAGEKTWR2640
 2641 QWSDRETREL TSKGSVSGYD IEMKPAHQSG LLASVHSWKF RKSE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle