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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60360536
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.57
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKGRRRNLSR KSGCEAAAQR QRLSWSRRRR RRRRGLSTFE SRMQVRVRLS LLLLCAVLLG  60
   61 SAAATSDDKT NQDDSLDSKS SLPTDESVKD HTTTGKVVAG QIFVDSEEAE VESLLQDEED 120
  121 SSKTQEEEIS FLESPNPSSK TYEELKRVRK PVLTAIEGTA HGEPCHFPFL FLDKEYDECT 180
  181 SDGREDGRLW CATTYDYKTD EKWGFCETEE DAAKRRQMQE AEMIYQAGMK ILNGSNRKSQ 240
  241 KREAYRYLQK AAGMNHTKAL ERVSYALLFG DYLTQNIQAA KEMFEKLTEE GSPKGQTGLG 300
  301 FLYASGLGVN SSQAKALVYY TFGALGGNLI AHMILGYRYW AGIGVLQSCE SALTHYRLVA 360
  361 NHVASDISLT GGSVVQRIRL PDEVENPGMN SGMLEEDLIQ YYQFLAEKGD VQAQVGLGQL 420
  421 HLHGGRGVEQ NHQRAFDYFN LAANAGNSHA MAFLGKMYSE GSDIVPQSNE TALHYFKKAA 480
  481 DMGNPVGQSG LGMAYLYGRG VQVNYDLALK YFQKAAEQGW VDGQLQLGSM YYNGIGVKRD 540
  541 YKQALKYFNL ASQGGHILAF YNLAQMHASG TGVMRSCHTA VELFKNVCER GRWSERLMTA 600
  601 YNSYKDEDYN AAVVQYLLLA EQGYEVAQSN AAFILDQREA TIVGENETYP RALLHWNRAA 660
  661 SQGYTVARIK LGDYHFYGFG TDVDYETAFI HYRLASEQQH SAQAMFNLGY MHEKGLGIKQ 720
  721 DIHLAKRFYD MAAEASPDAQ VPVFLALCKL GVVYFLQYIR EANIRDLFTQ LDMDQLLGPE 780
  781 WDLYLMTIIA LLLGTVIAYR QRQHQDIPVP RPPGPRPAPP QQEGPPEQQP PQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle