YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190339950, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	99	0.96
Transmembrane Helix	100	119	0.90
Non-Cytoplasmic	120	128	0.78
Transmembrane Helix	129	147	0.95
Cytoplasmic	148	166	0.85
Transmembrane Helix	167	188	0.90
Non-Cytoplasmic	189	262	0.94
Transmembrane Helix	263	284	0.94
Cytoplasmic	285	292	0.91
Transmembrane Helix	293	315	0.91
Non-Cytoplasmic	316	342	0.91
Transmembrane Helix	343	364	0.90
Cytoplasmic	365	374	0.84
Transmembrane Helix	375	397	0.88
Non-Cytoplasmic	398	431	0.85
Transmembrane Helix	432	456	0.78
Cytoplasmic	457	476	0.93
Transmembrane Helix	477	500	0.92
Non-Cytoplasmic	501	508	0.88
Transmembrane Helix	509	531	0.91
Cytoplasmic	532	549	0.90
Transmembrane Helix	550	572	0.93
Non-Cytoplasmic	573	587	0.86
Transmembrane Helix	588	611	0.87
Cytoplasmic	612	646	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMKESMMMN QEYGGEQQKV PESQENGRLV VDSVPEKDQK SGSGPGQVSN GYRSTSPQSP  60
   61 KEGAGTGTDR VNTPGTFRTL VVQQTSLDPP RETWSKKMDF LLSVIGYAVD LGNVWRFPYI 120
  121 CYQNGGGAFL LPYLLMAVFG GVPLFYMELA LGQFHRSGCI SIWKHVCPIF KGIGFAICII 180
  181 ALYIAFYYNT IMAWALYYLL SSFRATLPWT TCNNRWNTPN CTHYLSTDLN VSWTNNSISP 240
  241 AEEFYVRQVL QVHLSPGLHQ LGWVSWQLAL CLLFIFTVVY FSIWKGVKTS GKVVWVTATF 300
  301 PYLVLLILLI RGATLPGAWR GVVFYLKPDW KKLLTTTVWL DAAAQIFFSL GPGFGVLLAF 360
  361 ASYNPFHNNC YKDALITSSV NCLTSFLSGF VIFTVLGYMA EMRQQGVETV AKDAGPSLLF 420
  421 IIYAEAIANM PAATFFAIIF FLMIIMLGLD STFAGLEGVI TAMLDEFPHL LARRREWFVL 480
  481 GLVCVCYLGA LSTLTYGGAF VVKLFEEYAT GPAVITVVFL EVIAVSWFYG TTRFCNDVQL 540
  541 MLGFAPGLFW RVCWIAICPC FLLFIIVSFL AFPPEVKLFD YLYPFWTTVL GYCIGVSSFI 600
  601 CVPSYMVYHL VTTKGTFQQR LLKGITPEAP GSSGPQRDTI VITNAV