YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62085937, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNNVFDVLY MILELLIALL SVLGNVLVCW AVGLNSNLQS ITNFFVVSLA VADIAVGVLA  60
   61 IPFSIVISTG FCANFYGCLF IACFVLVLTQ SSIFSLLAIA IDRYIAIKIP LRYNSLVTGQ 120
  121 RARGIIAICW VLSVIIGLTP MLGWHKARLQ EGHNGTCPPG MMECLFEEVV VMDYMVYFNF 180
  181 FACVLVPLLL MLAIYLRIFM AARHQLKCIE SKAIPCELKS RSTLQKEVHA AKSLAIIVGL 240
  241 FAVCWLPLHI INCFTLFCPE CERPPALIMY LAIILSHANS VVNPFIYAYR IREFRHTFRK 300
  301 IVRYHILGRR EPLSCNGSTR TSTRTSVADS LRIKVNGLVR ELYAEQSSTT SSCESAEPGH 360
  361 THRPVSTENS ILDNQPIEIS NSHRHTALRH PESPLTGNNE GLACRKHAGL DITDGKDLSS 420
  421 PLHIKSALYV QTAHCVELTE VS

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.85
Transmembrane Helix	12	34	0.90
Cytoplasmic	35	43	0.82
Transmembrane Helix	44	66	0.91
Non-Cytoplasmic	67	77	0.71
Transmembrane Helix	78	101	0.92
Cytoplasmic	102	121	0.91
Transmembrane Helix	122	144	0.89
Non-Cytoplasmic	145	175	0.96
Transmembrane Helix	176	199	0.89
Cytoplasmic	200	229	0.96
Transmembrane Helix	230	251	0.89
Non-Cytoplasmic	252	266	0.84
Transmembrane Helix	267	289	0.90
Cytoplasmic	290	442	0.96