YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S38A2_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.94
Transmembrane Helix	74	95	0.82
Non-Cytoplasmic	96	103	0.59
Transmembrane Helix	104	126	0.89
Cytoplasmic	127	146	0.84
Transmembrane Helix	147	171	0.66
Non-Cytoplasmic	172	192	0.76
Transmembrane Helix	193	213	0.82
Cytoplasmic	214	217	0.73
Transmembrane Helix	218	239	0.90
Non-Cytoplasmic	240	285	0.87
Transmembrane Helix	286	306	0.82
Cytoplasmic	307	319	0.94
Transmembrane Helix	320	343	0.88
Non-Cytoplasmic	344	364	0.94
Transmembrane Helix	365	387	0.92
Cytoplasmic	388	405	0.88
Transmembrane Helix	406	424	0.97
Non-Cytoplasmic	425	431	0.71
Transmembrane Helix	432	452	0.94
Cytoplasmic	453	465	0.87
Transmembrane Helix	466	488	0.91
Non-Cytoplasmic	489	504	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKAPAQMSR FNIAPDMDSS STNSNEYTNY QDHASKVPLN GIQYSDVEAE SQNFLSDHHL  60
   61 GKKKYEAEYS PGSASFGMSV FNLGNAIMGS GILGLSYAMA NTGIAMFVIL LVAVAIFSLY 120
  121 SVHLLLKTAN EGGSLVYEQL GYKAFGIPGK LAASCSITMQ NFGAMASYLY IVKYELPIVI 180
  181 RAFLDSNDNA WYTNGDYLVL IVTMSIILPL SLLKNLGYLG YTSGFSLLCM VFFLIVVIYK 240
  241 KFQIPCPLPE NFINITVNVS QPPQTNNSTD EECCKPKYFI FNSQTVYAVP ILTFAFVCHP 300
  301 AILPMYEELK DRSRRKMQNV ANVSFLGMFI MYLLAALFGY LTFNEAVEPE LLHTYSKVYN 360
  361 FDVVLLIVRL AVLTAVTLTV PVVLFPIRTS VNHLLGASKE FSWPRHICIT VALLVCVNIL 420
  421 VIFVPTIRDI FGFIGASAAA MLIFILPSAF YIKLVKKESM KSVQKIGATL FLIMGFLVMT 480
  481 GSMALIIMDW IHNALSSEEH TGGH