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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TBX2_DANRE
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDPVFTGTA MAYHPFHAHR PTDFPMSAFL AAAQPSFFPA LTLPPGALTK PIPDHTLAGA  60
   61 AEAGLHPALS HHHQAAHLRS LKSLEPEEEV EDDPKVTLEA KDLWDQFHKL GTEMVITKSG 120
  121 RRMFPPFKVR INGLDKKAKY ILLMDIVAAD DCRYKFHNSR WMVAGKADPE MPKRMYIHPD 180
  181 SPATGEQWMA KPVAFHKLKL TNNISDKHGF TILNSMHKYQ PRFHIVRAND ILKLPYSTFR 240
  241 TYVFPETDFI AVTAYQNDKI TQLKIDNNPF AKGFRDTGNG RREKRKQLTL PSLRMYEDQC 300
  301 KVDRDGADSD ASSSEPTTGR DAGHSPGPVS SPLRFNRGSR DDKTCTDSEH EMDHQNDRCG 360
  361 GSSSPAPEPS SPFRSRSEDW GREKPIAEKK DDYPDSRKTS DSIFSIRNLE KDKLESRSRK 420
  421 DTDSSKKDTE NSGISGSKDS FSPLMVQTES PSHFGAGHLQ SLALSGLHSQ QFFNPLNTGQ 480
  481 PLLFHPGQFA MAPGAFSAMG MGHLLASVSG AGGLENGSLS AQGTGSTPSP FPFHLSQHML 540
  541 ASQGIPMPTF GGLFPYPYTY MAAAAAAASA LPASSSTASS LSRNPFLSSS TRPRLRFNPY 600
  601 QLPVSIPQST NLLTTGLPSG LNPSSESSKC GSREASPVPD HKSGASQRNG SPKTTMKESI 660
  661 NELQNIQRLV SGLESQRETS SPRDSPK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle