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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SOX1A_DANRE
Protein type: Transmembrane
Type Confidence: 0.73
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSMMMETDL HSPGPQTNTN PGQTGPNSGS KANQDRVKRP MNAFMVWSRG QRRKMAQENP  60
   61 KMHNSEISKR LGAEWKVMSE AEKRPFIDEA KRLRAMHMKE HPDYKYRPRR KTKTLLKKDK 120
  121 YSLAGGLLGG AGGGVGMSPA GVGQRLESPG GHGGSASAGY AHMNGWANGT YSGQVAAAAA 180
  181 AAAMMQEAQL AYSQHPGSGS HHHHAHHHHP HNPQPMHRYD MTALQYSPIS NSQSYMSASP 240
  241 SGYGGISYTQ HQNSSVATSA AIGTLSSLVK SEPNISPPVT THSRGPCPGD LREMISMYLP 300
  301 TGESGDPSVQ SRLHALPQHY QSTTAGVNGT VPLTHI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle