YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|63100961, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.83
Transmembrane Helix	35	55	0.71
Non-Cytoplasmic	56	90	0.62
Transmembrane Helix	91	109	0.66
Cytoplasmic	110	116	0.36
Transmembrane Helix	117	138	0.85
Non-Cytoplasmic	139	144	0.28
Transmembrane Helix	145	164	0.70
Cytoplasmic	165	165	0.33
Transmembrane Helix	166	184	0.53
Non-Cytoplasmic	185	197	0.61
Transmembrane Helix	198	218	0.83
Cytoplasmic	219	228	0.63
Transmembrane Helix	229	252	0.82
Non-Cytoplasmic	253	281	0.92
Transmembrane Helix	282	300	0.96
Cytoplasmic	301	332	0.90
Transmembrane Helix	333	352	0.77
Non-Cytoplasmic	353	399	0.64
Transmembrane Helix	400	418	0.88
Cytoplasmic	419	434	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGKKKSST APSRFQKTLS SIWQDKHTVL FKPEYTLLVT AVLWFLEIAI NIWVIQKVSY  60
   61 TEIDWKAYMD EVEGVINGTY DYTQLKGDTG PLVYPAGFVY IFTGLYYLTD HGHNIRLGQY 120
  121 VFAVSYLINL LLVMRIYHRT KKVPPYVFFF ICCASYRIHS IFILRLFNDP VAMMLCFGAI 180
  181 NLFLDGRWTL GCALYSLAVS VKMNVLLFAP GLLFLLLCEF GLWKTLPRLA LCAVIQLVLG 240
  241 LPFLLVNPVG YVSRAFDLGR QFLFKWTVNW RFLPEDVFLN RYFHLALLLA HITTLLLFAL 300
  301 KRWKRSGSSI WTILKDPSER KETAHKVNAD QMVLILFTSN FIGMCFSRSL HYQFYVWYFH 360
  361 TLPYLLWSGG VKKLARLLRV LILGLIELSW NTYPSTNYSS LSLHVCHLII LLCLWLNPNP 420
  421 ASPSHRSENK AKSH