YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8925-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.96
Transmembrane Helix	96	118	0.89
Non-Cytoplasmic	119	212	0.96
Transmembrane Helix	213	234	0.92
Cytoplasmic	235	242	0.89
Transmembrane Helix	243	265	0.89
Non-Cytoplasmic	266	271	0.72
Transmembrane Helix	272	293	0.91
Cytoplasmic	294	300	0.84
Transmembrane Helix	301	323	0.92
Non-Cytoplasmic	324	328	0.86
Transmembrane Helix	329	347	0.93
Cytoplasmic	348	437	0.98
Transmembrane Helix	438	460	0.87
Non-Cytoplasmic	461	466	0.88
Transmembrane Helix	467	490	0.89
Cytoplasmic	491	497	0.82
Transmembrane Helix	498	516	0.85
Non-Cytoplasmic	517	521	0.65
Transmembrane Helix	522	543	0.65
Cytoplasmic	544	552	0.54
Transmembrane Helix	553	574	0.92
Non-Cytoplasmic	575	581	0.59
Transmembrane Helix	582	602	0.94
Cytoplasmic	603	606	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVLRRGSL NFDCVGGPRD KGRGSLEANL YGGYRETRPG PKTPEISVIA LDFRRYSEDL  60
   61 KKPPSAEQTE QPPSRDLSQD EDSDVISNFL GHYTRWSFLW TLLLCLFQLP TTFHLFMFVF 120
  121 QIAPKDFWCA RPENLMQMSV SEWRNISQSS NGCLLLDVDY TQVTYENNQL INWPENATDL 180
  181 GYRQCWHFEF SDVDGSAKTL VQEFDLVCGR DILSLVETCF LVGAAAGAVL SGWISDRFGR 240
  241 RHTLMAFVTI QSVFGGILAF STSVAMFMSL RVIIGFASMT VTVVSFVLVV ELVSGKWRTV 300
  301 IGILNILPVA ISYVLSAGLA YLIRDWRHLQ LAISWPWLIM LSIWFWLPES PRWLLAQGRL 360
  361 DELCGLIERA ARMNGTSASL PSNYRKTLEA AVPRAVQSPP EATTSVESKA VEADAPDPSA 420
  421 SGHVNPLLVV FSAKYWRTTC LTLVIWLTLI IIYFGLTLHL SNLGGNIYIN SAVAGTVEAI 480
  481 SICISILVVL KVGIRRSLIG YMLLPGLCCL ATNLVSNQTG VIALATIAKC LIGANNAIIP 540
  541 TYTAMQYPTI VRNFGVGMGN LASGIALILV PFLWKLEHID PLLPLNVMGV CGLIGAVAIS 600
  601 LMKDVV