YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG14593-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	71	0.78
Transmembrane Helix	72	95	0.91
Cytoplasmic	96	106	0.74
Transmembrane Helix	107	130	0.91
Non-Cytoplasmic	131	150	0.74
Transmembrane Helix	151	171	0.73
Cytoplasmic	172	182	0.92
Transmembrane Helix	183	205	0.91
Non-Cytoplasmic	206	241	0.95
Transmembrane Helix	242	261	0.94
Cytoplasmic	262	287	0.97
Transmembrane Helix	288	311	0.91
Non-Cytoplasmic	312	331	0.96
Transmembrane Helix	332	354	0.87
Cytoplasmic	355	417	0.91
Transmembrane Helix	418	439	0.65
Non-Cytoplasmic	440	451	0.67
Transmembrane Helix	452	473	0.55
Cytoplasmic	474	489	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYASLMDVGQ TLAARLADSD GNGANDSGLL ATGQGLEQEQ EGLALDMGHN ASADGGIVPY  60
   61 VPVLDRPETY IVTVLYTLIF IVGVLGNGTL VIIFFRHRSM RNIPNTYILS LALADLLVIL 120
  121 VCVPVATIVY TQESWPFERN MCRISEFFKD ISIGVSVFTL TALSGERYCA IVNPLRKLQT 180
  181 KPLTVFTAVM IWILAILLGM PSVLFSDIKS YPVFTATGNM TIEVCSPFRD PEYAKFMVAG 240
  241 KALVYYLLPL SIIGALYIMM AKRLHMSARN MPGEQQSMQS RTQARARLHV ARMVVAFVVV 300
  301 FFICFFPYHV FELWYHFYPT AEEDFDEFWN VLRIVGFCTS FLNSCVNPVA LYCVSGVFRQ 360
  361 HFNRYLCCIC VKRQPHLRQH STATGMMDNT SVMSMRRSTY VGGTAGNLRA SLHRNSNHGV 420
  421 GGAGGGVGGG VGSGRVGSFH RQDSMPLQHG NAHGGGAGGG SSGLGAGGRT AAVSEKSFIN 480
  481 RYESGVMRY