YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58613691
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFFLALTLI LAYSLDTANG SCEGSLDLEN GRFFTRSNNL VIFQCNRGFV LQGNSIHTCD  60
   61 RDGRLREKKP FCARKGCEKP EDPTNGYVLD NPVKAEIVCL DGFVLYGSRT AFCDGEKWST 120
  121 QLGACRRSNH TMDHSCDFES EDQCGWSAEE TIWLPWKRIS AVTDFHHPRT GPRYDHTFGN 180
  181 ASGGHYMRME TQIEAYGSYH FVSPVYPRSL CLNAACCFRF HYFMFGAGVD RLVVSVKPAS 240
  241 LQIDDMWNSF RSNSSKFEIT GSQGTHWLEH TITIDKMHED FQVVFTATDA RSQFGDIAID 300
  301 DVKLMTGSEC GVDGYSTTTT TESASSAMSS SEEPLVFDMM SCTFRCGSIS PGSPLFSDEG 360
  361 IVMSCGCDDS CILNNNCCPN YFEKCVKELD IGSNVFLNSA NTTTTSISRN TTTEKVFSIS 420
  421 LEASRSFTTP RTSTNSTTFP RTQISTKKLL NTHETSTETS TIPTRNKKLS QPSIFSSQHI 480
  481 TVTTTTDRSR KDYHEDIAGQ MDMDIPHPAL IVMYLLIGVI LVIVVANLKQ LCKILTKNSS 540
  541 RDNEKVVSFK KAFEGLRKPR RLSQNCNGMD QHLCSAFDED LDYFEDMDMN IRMVTDL

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	509	0.99
Transmembrane Helix	510	528	0.87
Cytoplasmic	529	597	0.88