YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56269403, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRLKKQAK DAVKIIGCGS ALFLGYLTAS GDECFYASAL MPVLQRFVGG ETAHLMAVRL  60
   61 IGLGLVPRNN YKDPTSLEVH VMGRKFQNPV GMAAGFDKHG EAVDGLYRLG FGFVEVGTVT 120
  121 PKPQDGNPKP RVFRLESDQA VINRYGFNSC GLSAVHERLK AREHVQSELT KAGKPLGINL 180
  181 GKNKLSPDAV SDYVEGVRTL GPLADYLVVN VSSPNTPGLR DLQGKEELRH LLDKVVKERD 240
  241 SLRIENRPPV LVKIAPDLTT QDKQDIAEVI MEVGVDGVMV SNTTVSRPDT LKDPNRVETG 300
  301 GLSGQPLKEL STQTVREMYT LTQGKLPIVG VGGVASGQDA MDKIRAGASL VQLYTALVYQ 360
  361 GPPVVNKIKR ELDDLLKAQG FTCVAEAVGA DHKTTEKMAT TTSDVTP

Type	Start	End	Confidence
Signal Peptide	1	31	0.86
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	407	0.98