YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698678, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDSNMNLVL GQERSSWIRL RTMILLRWVA IAGQVAAILV AQHSYHLQLN LGLCYLAIGI  60
   61 SAVGNLLAIF LFPENKRLGE FENFLMVLFD LLQLGFLLYL TGGLHNPFAL LLVGPVIISA 120
  121 NVMGLRSTLF IGTTAIVLVT LLGLYHVPLR TEMGFILRIP DVFVFGHWTA IIIAIVFLGA 180
  181 YSYRISSEVQ SMSEALAATQ MALSREQKLT DLGGVVAAAA HELGTPLATI KLASSELVEE 240
  241 LDDRPDLRED AALIRQQADR CRDILRNMGR AGKDDLHLRQ APLSTVIHEA AEPHMHRGKT 300
  301 VHFDEGPGAG GDLQQPSILR KPEVIHGLRN LIQNAVDFAR ANVWVEAEWT AETIIVSIMD 360
  361 DGRGYPGHMI GRIGDPFVRR RRAEIDRRAR PEYEGMGLGL FIAKTLLERS GAELSFANGS 420
  421 DPYQTLTKQA ERRGAIVQVV WPRAQIDAQT GENSIPLGLN EQFQV

Type	Start	End	Confidence
Cytoplasmic	1	23	0.97
Transmembrane Helix	24	45	0.91
Non-Cytoplasmic	46	50	0.86
Transmembrane Helix	51	72	0.93
Cytoplasmic	73	83	0.88
Transmembrane Helix	84	105	0.82
Non-Cytoplasmic	106	126	0.71
Transmembrane Helix	127	147	0.92
Cytoplasmic	148	162	0.83
Transmembrane Helix	163	183	0.94
Non-Cytoplasmic	184	465	0.96