YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698541, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.93
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	38	0.87
Transmembrane Helix	39	62	0.86
Cytoplasmic	63	75	0.87
Transmembrane Helix	76	95	0.89
Non-Cytoplasmic	96	138	0.91
Transmembrane Helix	139	157	0.93
Cytoplasmic	158	162	0.85
Transmembrane Helix	163	182	0.93
Non-Cytoplasmic	183	201	0.83
Transmembrane Helix	202	221	0.92
Cytoplasmic	222	234	0.77
Transmembrane Helix	235	255	0.93
Non-Cytoplasmic	256	276	0.89
Transmembrane Helix	277	296	0.91
Cytoplasmic	297	304	0.71
Transmembrane Helix	305	324	0.87
Non-Cytoplasmic	325	329	0.71
Transmembrane Helix	330	349	0.94
Cytoplasmic	350	356	0.88
Transmembrane Helix	357	378	0.90
Non-Cytoplasmic	379	387	0.76
Transmembrane Helix	388	409	0.95
Cytoplasmic	410	442	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLIKTLLPA AAVIALPTLG LAQEATADIT PPNEEIGYIF TTFMFLVSGF LVMWMAAGFT  60
   61 MLEAGLVRQK NVTMQLTKNI ALFSLAALMY YLIGYNLMYP GDGWSIDGVL GAFSPAAMEP 120
  121 VGLADTETDL TYASVGSDFY FQLMFCATTA SIVSGTLAER IKLWPFLVFV LVLTGLIYPI 180
  181 QASWKWGGGF LDAAGFLDFA GSTVVHSVGG WAALAGALIL GPRLGKYKDG RVIPFMGSNL 240
  241 PLATLGTFIL WLGWFGFNGG SQLYMDTAGN VADISRIFAN TNTAAAGGAV AALLLTQLLY 300
  301 KKVDLTMVLN GALAGLVSIT AEPLTPGLGS ATLIGAVGGV IVVFAVPFLD RLKIDDVVGA 360
  361 IPVHLMAGVW GTLAVCLTNG DANLGTQLYA IVVVGLFTFV VSGAVWFILK MVMGIRVSEE 420
  421 EEINGLDMAE LGMEAYPEFS KS