YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678976, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.75
Transmembrane Helix	16	38	0.86
Non-Cytoplasmic	39	43	0.51
Transmembrane Helix	44	70	0.73
Cytoplasmic	71	111	0.77
Transmembrane Helix	112	134	0.90
Non-Cytoplasmic	135	143	0.70
Transmembrane Helix	144	163	0.89
Cytoplasmic	164	170	0.63
Transmembrane Helix	171	191	0.86
Non-Cytoplasmic	192	204	0.83
Transmembrane Helix	205	224	0.92
Cytoplasmic	225	267	0.94
Transmembrane Helix	268	289	0.92
Non-Cytoplasmic	290	328	0.93
Transmembrane Helix	329	352	0.87
Cytoplasmic	353	363	0.94
Transmembrane Helix	364	386	0.89
Non-Cytoplasmic	387	404	0.79
Transmembrane Helix	405	433	0.80
Cytoplasmic	434	441	0.73
Transmembrane Helix	442	461	0.88
Non-Cytoplasmic	462	475	0.81
Transmembrane Helix	476	498	0.91
Cytoplasmic	499	524	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLTMDALL AGIQNAFALG PLLAIAAGVS IGIFMGAVPG LTAAMAIALL APITFGMDPL  60
   61 TAVAFLIGIY KGGTFGGSIS AILLNVPGSP EATATAFDGY PLSKSGRAKQ ALQMALFASV 120
  121 CGAILADLML YAVAGPFSKI ALKFGPAELT FVVLFAFTFV AGLTGGSLAR GLIACAFGVL 180
  181 CAMVGLDPMS ASPRMTFGIV ELLDGLPLIP IAIGMLGLAE VMVAAERAFL RRKEVSSDTE 240
  241 SSPISATSGP HLSLPEFARH WKTVLRSSLI GSAIGALPGI GASLAAFIGY GTAQKYSKTP 300
  301 EKFGKGTLDG VAAPEAANSA VVGGSFVPLL TLGIPGNVTT ALLIGTFLVH GIEPGPHVFK 360
  361 TEPALIYGIF TILFVANFFN LAIGLMGSGL YAHIVKAPEY VSYSIIGLTC MTGVFASTNS 420
  421 IVSLYIMIIF AVIGYLMKKF DYSFVAFLIG FVLAPEFEVS FRSFLLVAQG DPLGLLMTRP 480
  481 IALAFCLLTI VAVLRIVWSE HQRRTRSATS LKNTPDPSSG QKNP