YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696961, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.94
Transmembrane Helix	45	69	0.90
Cytoplasmic	70	77	0.85
Transmembrane Helix	78	102	0.89
Non-Cytoplasmic	103	132	0.89
Transmembrane Helix	133	154	0.90
Cytoplasmic	155	161	0.76
Transmembrane Helix	162	184	0.91
Non-Cytoplasmic	185	201	0.97
Transmembrane Helix	202	224	0.90
Cytoplasmic	225	233	0.87
Transmembrane Helix	234	253	0.91
Non-Cytoplasmic	254	263	0.76
Transmembrane Helix	264	286	0.90
Cytoplasmic	287	293	0.83
Transmembrane Helix	294	313	0.92
Non-Cytoplasmic	314	319	0.67
Transmembrane Helix	320	340	0.90
Cytoplasmic	341	351	0.83
Transmembrane Helix	352	372	0.94
Non-Cytoplasmic	373	379	0.66
Transmembrane Helix	380	402	0.88
Cytoplasmic	403	431	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSGKNRHV SGRPPLFPAT EIRSTAPDTR NRSKGERPMN GADTAWIIVA TALVLFMTLP  60
   61 GLALFYGGLV RARNVLSVFM HCFAIACLMS ILWLVAGYSI AFGGGTSGFW GGLDKVMLIG 120
  121 VTADSLSGTL PEILFFAFQM TFAIITPALI VGAYVERVGF GFVLTFSGLW MLLCYAPVVH 180
  181 WIWGGGMMSD GGIFGETGVR DFAGGIVVHE TAGLAALIIA VMLGPRRNRT TPPHNPGFVM 240
  241 IGAAMLWVGW FGFNGGSQLA ADGGAAMALT VTHISAATAS LSWALWERIK YGKASLVGLV 300
  301 TGTIAGLASI TPASGFVGPA AALLIGAVAG ILCQEAVNLV RNWLRIDDTL DVFAVHGVGG 360
  361 IFGTLMIAVL GAGSWVAQLG GLVFVGLFTT GVTIVLVKVV ALVTPLRVDA ETETNGLDLS 420
  421 VHGERAYDMS S