YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696823, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLTPDAAP GRRHAASLLT PDARTRRRNR AEARFRAYGM GAILIGLMML AVLVFTIVSR  60
   61 GTGAYTQTFV TLDVELLESK LDKKGTRDIE AIKKVSTFGY APLINAAFET AMDKAGIETA 120
  121 LKPKDQAAIL SKRAAAQLRD YVIADPERIG QTVSFRFLAN SRVDGYLKGR VTRESIANDK 180
  181 SISTEQLDFV DQLIAAGMIR KTFNLDFILG SDASDQRPEA AGMGVSMVGS LFMMLVVLVL 240
  241 ALPIGVAASI YLEEFAPKNW LTDVIEVNIS NLAAVPSIVF GILGLAVFIN YMHLPMSAPL 300
  301 VGGLVLTLMT LPTIIISTRA SLKSVPPSIR DAALGVGASK MQAVFHHVLP LAAPGILTGT 360
  361 IIGLAQALGE TAPLLLIGMV GFIASNPPDG IAAGLLSPNS AMPAQIYEWA KRADPAFYER 420
  421 AWGGIIILLV FLVTMNTLAV ILRRRFERRW

Type	Start	End	Confidence
Cytoplasmic	1	34	0.93
Transmembrane Helix	35	58	0.91
Non-Cytoplasmic	59	227	0.85
Transmembrane Helix	228	252	0.87
Cytoplasmic	253	268	0.75
Transmembrane Helix	269	289	0.92
Non-Cytoplasmic	290	297	0.58
Transmembrane Helix	298	322	0.81
Cytoplasmic	323	342	0.78
Transmembrane Helix	343	368	0.77
Non-Cytoplasmic	369	420	0.74
Transmembrane Helix	421	442	0.92
Cytoplasmic	443	450	0.85