YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678429, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.62
Transmembrane Helix	10	44	0.75
Non-Cytoplasmic	45	75	0.59
Transmembrane Helix	76	95	0.90
Cytoplasmic	96	105	0.52
Transmembrane Helix	106	128	0.77
Non-Cytoplasmic	129	130	0.45
Transmembrane Helix	131	152	0.68
Cytoplasmic	153	159	0.73
Transmembrane Helix	160	183	0.91
Non-Cytoplasmic	184	193	0.86
Transmembrane Helix	194	217	0.86
Cytoplasmic	218	232	0.86
Transmembrane Helix	233	254	0.92
Non-Cytoplasmic	255	265	0.73
Transmembrane Helix	266	285	0.90
Cytoplasmic	286	299	0.81
Transmembrane Helix	300	318	0.94
Non-Cytoplasmic	319	330	0.81
Transmembrane Helix	331	353	0.83
Cytoplasmic	354	358	0.60
Transmembrane Helix	359	379	0.77
Non-Cytoplasmic	380	389	0.45
Transmembrane Helix	390	424	0.67
Cytoplasmic	425	439	0.53
Transmembrane Helix	440	463	0.85
Non-Cytoplasmic	464	469	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMDSIDIGL WVTGGLLVLV LTGMRVAFAA ALAGLVGLVW IFWAKFGYDP DRFGKALTVA  60
   61 VKTAGQVPHS KVSSQALSLI PTFILIGYLA YYAGLTRALF EAAKRWMAWV PGGLAVSTVF 120
  121 ATAGFAAVSG ASVATSAVFA RIAIPEMLAI GYNKRFAAGV VAAAGTLASL IPPSAILVIY 180
  181 AIIVEQDVGK LLLAGFVPGA FSAVIYVALI VGIAVVFKSV GPPVTGFTWR QRFASLPGAL 240
  241 PIVFVVVIII SFVYNPFGGD AWGTPTEGGA LGAFVVFCMA VFRGMKWAEF KSALLETAKL 300
  301 TVMIFTIIWG VLIYVRFLGF ADLPGAFSDW ITSLQMSPML ILVCILLAYA VLGMFMDAIG 360
  361 MLLLTLPVVY PAVMALNGGE AVSAADSAFG MSGPMCAIWF GILVVKMAEF CLITPPIGLN 420
  421 CFVVAGVRPD LSVQDVFRGV MPFFVADAVT IALLVAFPQI VLWLPTLAG