YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696686, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.82
Transmembrane Helix	8	28	0.93
Cytoplasmic	29	48	0.86
Transmembrane Helix	49	69	0.92
Non-Cytoplasmic	70	75	0.84
Transmembrane Helix	76	95	0.94
Cytoplasmic	96	114	0.90
Transmembrane Helix	115	134	0.93
Non-Cytoplasmic	135	151	0.74
Transmembrane Helix	152	171	0.91
Cytoplasmic	172	181	0.71
Transmembrane Helix	182	202	0.92
Non-Cytoplasmic	203	246	0.96
Transmembrane Helix	247	269	0.89
Cytoplasmic	270	280	0.86
Transmembrane Helix	281	302	0.94
Non-Cytoplasmic	303	402	0.97
Transmembrane Helix	403	425	0.93
Cytoplasmic	426	445	0.91
Transmembrane Helix	446	465	0.95
Non-Cytoplasmic	466	471	0.81
Transmembrane Helix	472	495	0.88
Cytoplasmic	496	502	0.84
Transmembrane Helix	503	522	0.94
Non-Cytoplasmic	523	545	0.86
Transmembrane Helix	546	566	0.89
Cytoplasmic	567	594	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQFTINLLF VGASFALYIG IAIWARAGST SEFYAAGRGV HPVMNGMATA ADWMSAASFI  60
   61 SMAGLIAFVG YDNSTFLMGW TGGYVLLALL LAPYLRKFGK FTVSEFIGDR FYSSTARLVA 120
  121 VICLIVASVT YVIGQMTGVG VAFGRFLEVS NTTGLLIGAC VVFAYAVFGG MKGVTYTQVA 180
  181 QYVVLIMAYT IPAVFISLQL TGNPIPGLGL FGEHTASGEP LLAKLDAILK ELGFSEYTTH 240
  241 NGDTFNMVLF TLSLMIGTAG LPHVIMRFFT VPKVSDARWS AGWALVFIAL LYLTAPAVGA 300
  301 MARLNITDMF WPNGTDGEAV TIEQIETDPR YDWMANWQKT GLLGWEDKNG DGKIQYYNDK 360
  361 SDAMAAKAAE KGWAGNELTN FNRDILVLAN PEIANLPGWV IGLVAAGGLA AALSTAAGLL 420
  421 LAISSAVSHD LIKGSINPNI SEKGELLSAR IAMAVAIGVA TYLGLNPPGF AAQTVALAFG 480
  481 LAAASIFPAL MMGIFSKKIN NSGAVAGMLA GLVVTLLYIF LHKGWFFIPG TNSFTDADPL 540
  541 LGTVKSTSFG AIGAAVNFGV AYLVAGMTKE TPQEIKDLVE SVRIPRGAGA AQDH