YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696462, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.96
Transmembrane Helix	15	37	0.89
Cytoplasmic	38	51	0.85
Transmembrane Helix	52	71	0.96
Non-Cytoplasmic	72	106	0.94
Transmembrane Helix	107	129	0.91
Cytoplasmic	130	135	0.95
Transmembrane Helix	136	156	0.93
Non-Cytoplasmic	157	175	0.83
Transmembrane Helix	176	194	0.96
Cytoplasmic	195	214	0.86
Transmembrane Helix	215	235	0.91
Non-Cytoplasmic	236	258	0.81
Transmembrane Helix	259	281	0.82
Cytoplasmic	282	291	0.59
Transmembrane Helix	292	309	0.85
Non-Cytoplasmic	310	315	0.74
Transmembrane Helix	316	335	0.94
Cytoplasmic	336	347	0.87
Transmembrane Helix	348	369	0.92
Non-Cytoplasmic	370	385	0.86
Transmembrane Helix	386	406	0.93
Cytoplasmic	407	457	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGNLNALTT VFTEFYYWVT VVFMFLIHVG FCMYEVGASR RRNHMHTLMK NVMVIPLVTV  60
   61 TFFFFGWWIY WAFPMFPFFG GLNTEAGAAN LPWAETMGPN AADRITGVFW AAFLLFSWTA 120
  121 ASIVSGAVIE RIRSSALWVH AVLIGSVWWI IDAAWGWHYG GWMVQYLGYH DAYASGVIHA 180
  181 IAGGYALGVI MVLGPRIGKF APDGTPRDIP PHNPWMLTIG IFLIYTGFWG FYAACNVPAI 240
  241 SPEAIGGQIT GTTWTATNIY LAPTSLSGIT FNFLMSLSGG LMAAYVVSKG DAFWTFSGGL 300
  301 AGVITASAGN DLYHPIQAMI IAAIGVVIVY RLHYWVERRF KLDDAVGAVA VHGYAGFIGL 360
  361 IIAGFVLWGA PSSPYEGYAT INPVGQFIGA LIMFFGLGFL PAFVVAKMQA AAGVLRIPEE 420
  421 VELEGLDYAE HHAYEDAKEA IIEADKAYLA SKVSPAE