YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696438, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	135	0.97
Transmembrane Helix	136	157	0.92
Cytoplasmic	158	173	0.87
Transmembrane Helix	174	193	0.94
Non-Cytoplasmic	194	233	0.92
Transmembrane Helix	234	255	0.91
Cytoplasmic	256	264	0.83
Transmembrane Helix	265	286	0.94
Non-Cytoplasmic	287	298	0.81
Transmembrane Helix	299	318	0.91
Cytoplasmic	319	335	0.83
Transmembrane Helix	336	360	0.85
Non-Cytoplasmic	361	381	0.72
Transmembrane Helix	382	403	0.82
Cytoplasmic	404	409	0.65
Transmembrane Helix	410	428	0.85
Non-Cytoplasmic	429	433	0.70
Transmembrane Helix	434	455	0.89
Cytoplasmic	456	463	0.95
Transmembrane Helix	464	485	0.93
Non-Cytoplasmic	486	507	0.94
Transmembrane Helix	508	531	0.91
Cytoplasmic	532	571	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIRRPEQGR ARCCHPKSDR NHLNLRKIGS FWLFGRQANK RNKIRRGKNI SLGLKRCLKS  60
   61 ANFGPSSPHR LSDRQSGLNW PTRRWHWSPD WSPETPATPG KARPEPTENQ EGNKMSLDIS 120
  121 AIHAEQVTLN SLVQNLLYAS GTVGAILVVV GLLLIDAGTA RRKNLFNSTI EKTLGFFLGF 180
  181 ATYYVIGFGI WASQYYIMVD ATMTDSIKDW WLGGGMTNSL AHHVDPALFP GLNTFQIFVF 240
  241 FLAVFAGIIN ILLHFSVSER MKASAYYITC VVAAVVSSVL SWATWGSVGP LTNAGFHDFF 300
  301 GVGFVYLFPA GMALVFTPKL GARPGMMEPH ARVSAYLAPS IGLCAPGLLL IFGGLPMVIM 360
  361 SCLFFFDPEA LAVSVTMADT SVGIALNNYA LVWAGGAVTG LILAYRSGNY AYTLLGPLAG 420
  421 YVAGASGFDV YLPWQAFLIG LAAPFIAYAV YEFTLKRGID EHKLFPLFLG CGTFGMIVLG 480
  481 VFKAGTPRGG YLGFEEGAYA FQHGQISLGM QLVGIAVCIG AGVVTALILS VILEKTVGLR 540
  541 VDEHDQIDGL DKKIWDLEPD VHTHADSVPR A