YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678171, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.70
Transmembrane Helix	20	39	0.94
Non-Cytoplasmic	40	72	0.50
Transmembrane Helix	73	87	0.25
Cytoplasmic	88	103	0.61
Transmembrane Helix	104	129	0.77
Non-Cytoplasmic	130	145	0.60
Transmembrane Helix	146	173	0.81
Cytoplasmic	174	180	0.75
Transmembrane Helix	181	204	0.78
Non-Cytoplasmic	205	210	0.58
Transmembrane Helix	211	232	0.76
Cytoplasmic	233	267	0.81
Transmembrane Helix	268	292	0.82
Non-Cytoplasmic	293	304	0.68
Transmembrane Helix	305	323	0.81
Cytoplasmic	324	348	0.71
Transmembrane Helix	349	369	0.92
Non-Cytoplasmic	370	419	0.77
Transmembrane Helix	420	440	0.93
Cytoplasmic	441	445	0.66
Transmembrane Helix	446	462	0.80
Non-Cytoplasmic	463	468	0.53
Transmembrane Helix	469	491	0.88
Cytoplasmic	492	498	0.62
Transmembrane Helix	499	517	0.52
Non-Cytoplasmic	518	518	0.34
Transmembrane Helix	519	543	0.80
Cytoplasmic	544	582	0.64
Transmembrane Helix	583	606	0.86
Non-Cytoplasmic	607	625	0.65
Transmembrane Helix	626	645	0.91
Cytoplasmic	646	658	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTTTETTG TAPALPRKTL GLAMIGLAVM MTLLHYAGLL PAWLHRLPEA IIPPFATWLD  60
   61 AIFNFVKDDL GLLALTRLLT DGLEVVLDAT ANLLFGKRRW PNIGPIPWSA IAAMTAVVGY 120
  121 YLGGWRMALL AGGTFVWTAM IGQWDIAMQT MSVLVVAAPL AFAIGLVLGI SAWKSPSFDA 180
  181 VLRPVLAVLQ TLPFFTYLLP AVIFFKVGPT AGAVATTVYA IPPMILMTTL GLQKVSPEVV 240
  241 EAGKMSGCTR WQMLRHVYIP AARTEILVGV NQVIMLCLAM VVLTAFIGMP GLGAKLLAMM 300
  301 GSFKIGRSFE IGVTIVLLAV TLDRMSKAWV VKLPEHFERG TPFWIRHKFL LMAIGAFVGF 360
  361 TLIAQVVPIL SEVGRKQSWS QGKEIDTLIK GFLAIDAVQA ITNSIRYVLN IWVLNPLRDF 420
  421 MLSIPTVAFV LFISAAALLV AGRREAVLAA AFFGLVALTG WWDRSVITLY SVLAAVSIAL 480
  481 LLGVPIGVVA ARKEKTANAV LLACDTAQTF PSFIYLIPAI MLFGITATSV VMSILIFSMV 540
  541 PLVRYTIEGL RNVPDEMTEA ADMAGATRMQ KLWNVQLPLA LPTMAVGFNQ AIMFAFFMVI 600
  601 IAAFIGTQDL GQELQRTLAG TDLGKNFVLG ICVTLMALTF DMVIMKWADD KKARLGLN