YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677767, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.87
Transmembrane Helix	16	38	0.88
Non-Cytoplasmic	39	46	0.82
Transmembrane Helix	47	67	0.86
Cytoplasmic	68	83	0.65
Transmembrane Helix	84	106	0.75
Non-Cytoplasmic	107	109	0.49
Transmembrane Helix	110	130	0.88
Cytoplasmic	131	136	0.81
Transmembrane Helix	137	158	0.94
Non-Cytoplasmic	159	183	0.89
Transmembrane Helix	184	206	0.91
Cytoplasmic	207	253	0.97
Transmembrane Helix	254	276	0.89
Non-Cytoplasmic	277	289	0.89
Transmembrane Helix	290	309	0.92
Cytoplasmic	310	324	0.83
Transmembrane Helix	325	346	0.90
Non-Cytoplasmic	347	408	0.96
Transmembrane Helix	409	431	0.85
Cytoplasmic	432	437	0.72
Transmembrane Helix	438	459	0.83
Non-Cytoplasmic	460	469	0.69
Transmembrane Helix	470	492	0.85
Cytoplasmic	493	498	0.78
Transmembrane Helix	499	523	0.87
Non-Cytoplasmic	524	544	0.87
Transmembrane Helix	545	570	0.86
Cytoplasmic	571	620	0.93
Transmembrane Helix	621	641	0.86
Non-Cytoplasmic	642	652	0.67
Transmembrane Helix	653	674	0.89
Cytoplasmic	675	687	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAADISVPR VARLTVGTWA ALITALVGAL CLALEPVAPW LGAWPKAWVL PATDWVGTVM  60
   61 TAFLAWFKPV ARLFSAVMVY PMDAANWVLN ATPWPLVIGI VTALGWYLGG AAMAALGLGG 120
  121 LGFVLASGYW HEGMNTLALV AVSVPLALLV GGAIGILANE VPRIRGAVQA VLDIMQTVPT 180
  181 FAYLTPLLAL FGFGPVVGLI ASAIYAAPPM ARNVMLGLER VEAEVKEAAI MSGGTRMQQL 240
  241 FQVEIPSASR QIMVGFNQCL MAALSMVIIA AVIGGFNDIG WEVLLTMRKA QFGAALLAGM 300
  301 VIVAFAVIID RMSAVLATER KRHDIRVVWA LLGLALAFTL VFWTRLPAAS DLTLLDPVAV 360
  361 SLDQGLTRFT QANGAALDAL KNNTLYYVLL PLRIGLDQAV LPFTWGFSWT PQMSSALFAL 420
  421 GAVLALGMAW AGRASAGLMI LIGFGMIETG ITNLPWPFVL TGAAALGYVA GGRRLALMVV 480
  481 ILLGTILVSG LWDRALLSLY LCGASVFACA VLGGAIGVAS AVWTPVWRVV RPICDMLQTI 540
  541 PLFVFLIPVL MVFQIGEFSA FLAICAYAIV PMIRYTRHGL VDTPDEMMEA AISSGATDWQ 600
  601 ILRDVRAPYA APTILLGLNQ TILYAFSMLV IAALIGTTGL GQSIYLALGQ ADVGLGISAG 660
  661 AAMAILALIA DRLVQGFAEE RRKALGL