YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677501, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.88
Transmembrane Helix	25	46	0.90
Non-Cytoplasmic	47	57	0.69
Transmembrane Helix	58	77	0.95
Cytoplasmic	78	84	0.69
Transmembrane Helix	85	104	0.86
Non-Cytoplasmic	105	111	0.79
Transmembrane Helix	112	133	0.86
Cytoplasmic	134	137	0.62
Transmembrane Helix	138	158	0.87
Non-Cytoplasmic	159	187	0.87
Transmembrane Helix	188	210	0.92
Cytoplasmic	211	224	0.94
Transmembrane Helix	225	246	0.90
Non-Cytoplasmic	247	273	0.91
Transmembrane Helix	274	295	0.92
Cytoplasmic	296	325	0.68
Transmembrane Helix	326	347	0.70
Non-Cytoplasmic	348	361	0.40
Transmembrane Helix	362	389	0.80
Cytoplasmic	390	403	0.31
Transmembrane Helix	404	425	0.88
Non-Cytoplasmic	426	432	0.32

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHSEAELSP AHPKKSFVQT LELDLRLLGM IGAFAILCVG FDIVTGGRFL TPRNIFNLTI  60
   61 QTVSVAIMAT GMVFVIVTRH IDLSVGALLA TCSAVMAMTQ TEILPNMLGL GLGHPLIPWV 120
  121 TILVGLLVGS LIGAFHGWLV GYLAIPAFIV TLGGLLVWRN VGWYLTSGKT IGPLDPTFMQ 180
  181 FGGINGTLGA TWSWIVGLLA LAAALYGLWA SRKNKLRHGF PVKPLWAEGV LAALISGAIL 240
  241 GFVAILNAYE VPLARLKRDF AAQGLTLPEG YTEAYGIPIS VLLLIFIAVG MTMLARRTRL 300
  301 GRYIFATGGN PDAAELSGIN TRLLTVKIFA LMGALCAISA VVASARLTNH SNDIGTLDEL 360
  361 RVIAAAVIGG TALAGGFGTI HGAILGALIM QSLQSGMAMV GVDAPLQNIV VGAVLVLAVL 420
  421 IDILYRRKTG AR