YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56695505, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.56
Transmembrane Helix	20	46	0.86
Cytoplasmic	47	58	0.48
Transmembrane Helix	59	82	0.79
Non-Cytoplasmic	83	105	0.59
Transmembrane Helix	106	131	0.78
Cytoplasmic	132	147	0.59
Transmembrane Helix	148	172	0.86
Non-Cytoplasmic	173	179	0.46
Transmembrane Helix	180	204	0.85
Cytoplasmic	205	231	0.63
Transmembrane Helix	232	249	0.93
Non-Cytoplasmic	250	256	0.53
Transmembrane Helix	257	277	0.91
Cytoplasmic	278	291	0.59
Transmembrane Helix	292	313	0.86
Non-Cytoplasmic	314	328	0.63
Transmembrane Helix	329	354	0.86
Cytoplasmic	355	370	0.61
Transmembrane Helix	371	396	0.81
Non-Cytoplasmic	397	407	0.62
Transmembrane Helix	408	432	0.82
Cytoplasmic	433	442	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWNTLNQTV ELGWDFYLPV IMFVGLIALA VPVWAAIGAA AITMLIMSGD MPLSAVGESL  60
   61 FTGIDAFALT AVPLFILTGD VLVRTGLSRK FLDVAEALTQ FAKGGFGSAT VLVCGMFAAI 120
  121 SGSDAAGAAA VGRMTIDRLV ESGYPRPYAC ALVAAGACTG ILIPPSIAYI IIGLVLGISA 180
  181 STLFLAALIP GLCILISILV TNVVMNRING WEGGGNISAG EYFGNLGRSL KSGWYAFIVP 240
  241 GIIFYGIFSG RLTPTEAGAT AVVVTVLMGF ILRTLSLSDF PAMLVSSAKV NGVILPIIAF 300
  301 SAPLAEALAI MGVPQGFVAA VTGMTDEPWL LILLMIGILI AAGCVMETTP NIVILAPILK 360
  361 PLADNIGMNE IQFCIMMITA LGVGFITPPL GLNLFVVSGI TGESILKIAA RAVPFVLFML 420
  421 LVVLLIAYLP AISTTLLPDI YK