YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677206, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHARSGTQA MSRQTDQDRI AVLGLGYVGL PLALGLARAG FQTLGFDTDA AHITALGRGH  60
   61 DRNGEVSERS LAETRARFSC DPADLAGCTV YIIGVPTPIT DAKTPDLEPL KGACRMIAPH 120
  121 LVPGDMVIVE STVYPGVTEE ICGPVLAEGS GLELYSQIKL AYSPERVNPG DAEHSMENVV 180
  181 KIVSAQDAET LDRVAAIYAP VVKAGVHRAS SIRTAEAAKV IENTQRDLNI ALVNEFSLIF 240
  241 SRLGLDTLEV LEAAGTKWNF LPFKPGLVGG HCIGVDPYYL TYRAEQSGYH PEVILAGRRI 300
  301 NDNMGRHVAR QLIKALIARR IDPGRARVLV MGFTFKENCA DIRNTRVADI LSELAEYSVA 360
  361 TEVCDPWVDP EAMEQEYGVT PVSEPTTGAY DAIVVAVAHR QFVELGAAAI RAFGLPGAVL 420
  421 YDIKGIFSKS DTDLRL

Type	Start	End	Confidence
Cytoplasmic	1	19	0.78
Transmembrane Helix	20	40	0.75
Non-Cytoplasmic	41	436	0.99