YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56676899, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAFIKLLLE LFFPLRNHPP VHEPREVDMT CKFLTLSASA LVLTTGMAFA QTEIQWWHAM  60
   61 GGTNGERVDK IAADFNASQS EYKVVPTYKG NYTETMTAAV AAFRAKEHPH LVQVFEVGTA 120
  121 TMMAAKGAIY PVEQLMSDAG EPFDKSDYLP AVISYYQTSE GELLSMPFNS STPVLWYNAD 180
  181 ALKAAGVEVP KTWDDMKTAA KALVDSGMDC GFSFGWQSWV MIENYSAWHN IAMGTKENGF 240
  241 AGFDTELSFN NDEVTARLDD IAAMSEGNLF KYGGRRGDSL PMFTNGECGM WMNSSAYYGS 300
  301 IKGQAQFEFG QTMLPLDSAV ADAPQNSIIG GATLWALAGH EAEEYKGLAK FMTYLSSPEV 360
  361 QAWWHQETGY VPITTAAYEL SKEQGFYDSN PGTDTAIQQL SLNTPTANSR GIRFGNFVQI 420
  421 RDVINEELEA LWAGDKTAAQ ALAAATERGN ALLRKFERSA N

Type	Start	End	Confidence
Signal Peptide	1	50	0.49
N-region	1	41
H-region	42	47
C-region	48	50
Cleavage Site	50	51
Non-Cytoplasmic	51	461	0.99