YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56421069, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKIGLAWQI FIGLILGIMV GAIFYGSPKV ATYLQPIGDV FLRLIKMIVI PIVVSSLIVG  60
   61 VANVGDVKKL GKLGGKTILY FEIITTIAII VGLLAANIFQ PGVGVNMKSL EKTDIQSYVD 120
  121 TTNEVQHHSM VETFVNIVPK NVFEALSTGN MLPIIFFSVM FGLGVAAIGE KGKPVLRFFQ 180
  181 GTAEAMFYVT NQVMKFAPFG VFALIGVTVS KFGVASLLPL SKLVVLVYAV MAFFVLVVLG 240
  241 AVAKLVGTNI FHIIKILKDE LVLAYSTSSS ETVLPKVMEK MEKFGCSKAV TSFVVPTGYS 300
  301 FNLDGSTLYQ ALAAVFIAQL YGIDMPISQQ ISLVLVLMVT SKGIAGVPGV SFVVLLATLG 360
  361 TVGIPVEGLA FIAGIDRLLD MARTVVNVIG NSLAAVVMSK WEGQYNEEQG KQYIAELQQQ 420
  421 SA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	26	0.94
Non-Cytoplasmic	27	43	0.86
Transmembrane Helix	44	65	0.91
Cytoplasmic	66	77	0.87
Transmembrane Helix	78	99	0.93
Non-Cytoplasmic	100	150	0.94
Transmembrane Helix	151	169	0.93
Cytoplasmic	170	195	0.80
Transmembrane Helix	196	215	0.86
Non-Cytoplasmic	216	224	0.73
Transmembrane Helix	225	247	0.92
Cytoplasmic	248	306	0.82
Transmembrane Helix	307	328	0.51
Non-Cytoplasmic	329	343	0.39
Transmembrane Helix	344	373	0.73
Cytoplasmic	374	422	0.63