YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84370231, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSTGPGNT SDCSDPLAQA SCSPAPGSWL NLSHVDGNQS DPCGLNRTGL GGNDSLCPQT  60
   61 GSPSMVTAIT IMALYSIVCV VGLFGNFLVM YVIVRYTKMK TATNIYIFNL ALADALATST 120
  121 LPFQSVNYLM GTWPFGTILC KIVISIDYYN MFTSIFTLCT MSVDRYIAVC HPVKALDFRT 180
  181 PRNAKIVNVC NWILSSAIGL PVMFMATTKY RQGSIDCTLT FSHPTWYWEN LLKICVFVFA 240
  241 FIMPVLIITV CYGLMILRLK SVRMLSGSKE KDRNLRRITR MVLVVVAVFI VCWTPIHIYV 300
  301 IIKALITIPE TTFQTVSWHF CIALGYTNSC LNPVLYAFLD ENFKRCFREF CIPTSSTIEQ 360
  361 QNSTRVRQNT REHPSTANTV DRTNHQT

Type	Start	End	Confidence
Non-Cytoplasmic	1	70	0.91
Transmembrane Helix	71	94	0.90
Cytoplasmic	95	104	0.81
Transmembrane Helix	105	124	0.87
Non-Cytoplasmic	125	145	0.63
Transmembrane Helix	146	168	0.61
Cytoplasmic	169	187	0.87
Transmembrane Helix	188	206	0.93
Non-Cytoplasmic	207	233	0.91
Transmembrane Helix	234	257	0.93
Cytoplasmic	258	277	0.95
Transmembrane Helix	278	301	0.90
Non-Cytoplasmic	302	315	0.92
Transmembrane Helix	316	339	0.79
Cytoplasmic	340	387	0.87