YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5-HT1B-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTVTTAMA AGDDDVPASI LEIELPAILL NESLFIELNG NLTQLVDTTS NLSQIVWNRS  60
   61 INGNGNSNTF DLVDDEQERA AVEFWLLVKM IAMAVVLGLM ILVTIIGNVF VIAAIILERN 120
  121 LQNVANYLVA SLAVADLFVA CLVMPLGAVY EISNGWILGP ELCDIWTSCD VLCCTASILH 180
  181 LVAIAADRYW TVTNIDYNNL RTPRRVFLMI FCVWFAALIV SLAPQFGWKD PDYMKRIEEQ 240
  241 HCMVSQDVGY QIFATCCTFY VPLLVILFLY WKIYIIARKR IQRRAQKSFN VTLTETDCDS 300
  301 AVRELKKERS KRRAERKRLE AGERTPVDGD GTGGQLQRRT RKRMRICFGR NTNTANVVAG 360
  361 SEGAVARSMA AIAVDFASLA ITREETEFST SNYDNKSHAG TELTTVSSDA DDYRTSNANE 420
  421 IITLSQQVAH ATQHHLIASH LNAITPLAQS IAMGGVGCLT TTTPSEKALS GAGTVAGAVA 480
  481 GGSGSGSGEE GAGTEGKNAG VGLGGVLASI ANPHQKLAKR RQLLEAKRER KAAQTLAIIT 540
  541 GAFVICWLPF FVMALTMSLC KECEIHTAVA SLFLWLGYFN STLNPVIYTI FNPEFRRAFK 600
  601 RILFGRKAAA RARSAKI

Type	Start	End	Confidence
Non-Cytoplasmic	1	90	0.62
Transmembrane Helix	91	117	0.86
Cytoplasmic	118	123	0.63
Transmembrane Helix	124	149	0.83
Non-Cytoplasmic	150	164	0.60
Transmembrane Helix	165	184	0.63
Cytoplasmic	185	205	0.90
Transmembrane Helix	206	226	0.93
Non-Cytoplasmic	227	250	0.94
Transmembrane Helix	251	274	0.92
Cytoplasmic	275	534	0.85
Transmembrane Helix	535	557	0.89
Non-Cytoplasmic	558	570	0.79
Transmembrane Helix	571	591	0.90
Cytoplasmic	592	617	0.94