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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|62484222, gi|...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCQFVRTLC IPHSEVCYDD NIFGKCIPTT GVDVEDIEKT PLTEDQSRVL ATMLEELQGA  60
   61 GLGWDHPYVQ CRIQGSLFSL QRQQQLPPNL CANLAPTPPE FGDPASALAY VRFTPPEPEA 120
  121 ELDYYEQPAG PAQFYPALRK KQVRESDADD MYLNRMLQDR RRLRHDPSEL EHFGKMDGHG 180
  181 QSTQLDAPSI MDAFLDTERQ RIEREQQLAA AEQDADRRAE QNRLELYQIL AASEPDPQPY 240
  241 QRKPAAQPNA MDQLEAIVEQ QQQRELKEQQ EQAKAPVYVP PEEVNESSEL YFPDNFAPFK 300
  301 RARGRSRGGL AEEVEDEQPK RSFFRELAGE QGLVQEPPLR FRHVETEVDA TPELVKRRPA 360
  361 SFKQLDPYDV SLQQQEMAFE SGLLRNSLTP LEEEAMLASN SFPRQAKSQR VYTEGGLLLM 420
  421 PQDEQDTDGM QADEPENVKQ SLLANMLGFA RHERLDVKKP GPLLGPPSLG SAELSNQLET 480
  481 EKAHKQKGHG NKEVLPAHIK GNDEDDAHKK KKVMKQQHSA EDHAPHTVDT EYVHVFVKNP 540
  541 IDSWNDGQRI MKELEQILHM QGYFSYLTVQ QHEVSFRVNS NNPERKTAGD VARTINENRG 600
  601 VKNNIQRRVG FYVLHAGVGD VIKDLQDPSV SSSRIELAEQ GPDVTHIMAY MFAGAGAAAV 660
  661 IVIFVTLILI KRHDRKRDKL GGLQSGIAGA ETCSKDYQEL CRARMAGKAG GGGNSTGGAA 720
  721 GGGSNEPAPS GRITSLSKEN EGRPPSSRSS TSSWSEEPAL TNMDISTGHM VLSYMEDHLR 780
  781 NKGRLQREWE ALCRYEAEPS AREAASQPQC AGLNRPGAPL PYDHSRVVLN HLANAEGLDY 840
  841 VNASTITDHD PRAPAYVAAQ GPLPSTLAHF WQMIWEQGAV VIVALCRLQE NGEVACARYW 900
  901 PEEGAEVYHI YEVHLVSEHI WCDDYLVRSF YLKNLRTSET RTVTQFHFLS WPHMGVPAQA 960
  961 KALLDFRRKV NKSYRGRRSC PIVVHGSAGA GRTGVYILLD LVLERMNKGA REIDIAATLE1020
 1021 HLRDQRAGVV ATRQQFEFVL MAVAEEVHAI LKALPANTSG EKRELDKDPV VGGGSSSTTT1080
 1081 KEPLKEDKAQ EAAEEEAPTS SSKAAAAAKK EKEKDKDKEE KQAKDQAKVA EPRTPAKSAK1140
 1141 QAKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle