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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|56468541, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDITESEFTI FEVTPDPNEL NNKRIKEIKG GKVNIKELFR YAGVFEIILL IIGIIGSIGV  60
   61 GCLNPLLMIL TGDVVDTFVN GENFSKEGGS IKITTEEMNY EIMNSISDTI NKLVLKMLYF 120
  121 AIGNMVAGFL QTICFFVLSE YQGIKIRSLY FKALLRQDPG WFDCHKTGEL TSKIINDIQK 180
  181 IQDGMSLKFG RLFQTFSSFI TGYLIGFIKC WDLTLVVLCM FPFIMVSMMG LGMSAGIFTM 240
  241 KSHKPFSEAC SIAEQTIGNI RTVHSLTQER SFCESYNTKI METDKYNIKK SIGIGTGLGC 300
  301 MMFFIMSSNA LGSWYGNFVV RGKGGSDNVK AGTVLTVFMS VLLATQSLSQ ISTPINILNS 360
  361 AKVAAFNVYQ TIDRIPDIDC QSIGGECPTE CNGNIRFEDV QFVYPTRLSH HVLKGLDLEI 420
  421 KKGQTIALVG ASGCGKSTTI QLIQRNYDPN GGRVTLDGKD IRELNIKWLR NQIGLVGQEP 480
  481 VLFAGTIREN IMLGAKEGAT PSEEEMIECA KMANAHDFIS KLPEGYDTII GEKGALLSGG 540
  541 QKQRIAIARA LIRNPSILLL DEATSALDTQ SEKIVQEALE KASKGRTTII VAHRLTTVRN 600
  601 ADKICVFHQG EIIEQGKHQE LMDLKGTYYG LVKRQSMEEE VDQETVENDL KKFREQEDKE 660
  661 VENISLEQTN LHNENSIVKQ IKQEYKEEQK KLKHSNRFVL FRVIWNNYKH EYIFCTLGLI 720
  721 GGIGAGAAFP FYSLNFVDLI RVLMKLHPGI NLTDEQANSI LRSCMIIICI GIITMISFFC 780
  781 YVGLFMAAGE KMIGRIRRRF YYSIMHQNVS WFDRRENMVG AVTTKLTSDP TSLQGISAER 840
  841 VGDIIEIMST VGFGFGIGLY FSWKLSLCIL AVFPIISFFM FINGQLNSKN AAPAKAAYEQ 900
  901 CGVTLVEVVE AMKTVQSLGK EDYFSQKYNN DLQIPKRGII KWGPLLSITN AITNLLTFSI 960
  961 NAYGYYLGIC FMKKTINYQQ DVPNFVDEII DTFGDIQKAL MTINSATTSF AQIGNVLPDV1020
 1021 GKAVGAAKSI YNIIDRKPSI DCYSEEGETF NDVKGEIEFK NIHFRYPTRA DNEVLKGISF1080
 1081 KAEQGKTIAL VGASGCGKST TIQLIERFYD PTSGEVLLDG HNIKDLNIHF LRNQIGLVGQ1140
 1141 EPVLFAESVI DNIKRGVPEG VEVSNEQIYA AAKMANAHDF ISAMPEGYNT MVGDRGSQLS1200
 1201 GGQKQRIAIA RALIRNPKVL LLDEATSALD SESEKIVQDA LDKASKGRTT IVIAHRLSTI1260
 1261 QNADKIYVIM RGKIVEQGKH QELIDLKGFY YTLAMQQFGT VN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle