YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58701989, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.86
Transmembrane Helix	27	45	0.88
Cytoplasmic	46	53	0.81
Transmembrane Helix	54	72	0.96
Non-Cytoplasmic	73	85	0.75
Transmembrane Helix	86	107	0.90
Cytoplasmic	108	116	0.81
Transmembrane Helix	117	139	0.89
Non-Cytoplasmic	140	146	0.92
Transmembrane Helix	147	168	0.94
Cytoplasmic	169	243	0.98
Transmembrane Helix	244	267	0.91
Non-Cytoplasmic	268	279	0.93
Transmembrane Helix	280	298	0.94
Cytoplasmic	299	313	0.84
Transmembrane Helix	314	334	0.88
Non-Cytoplasmic	335	348	0.84
Transmembrane Helix	349	371	0.89
Cytoplasmic	372	383	0.89
Transmembrane Helix	384	406	0.89
Non-Cytoplasmic	407	415	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYFTDRLKN GTNSTQPDTY MFSNNSVLLA QLPLLLFTLL NSFLYQHIAE KIRIAGSMVA  60
   61 ILLLFILTAI LVKVDMDRDS FFSITMATIW FINMFGAILQ GSLFGLVGKL PSRFSSVFMS 120
  121 GQAVAGIFSG LAMLFSNIFE TNPESSALGY FITPCAATLL TLFCYLLLPH LRFARTYLEK 180
  181 VSCETADAVK EPSANGSETV KVKLNDLGHE FNDIGETEAC EKLNKFNDEQ TEEKSTVPQV 240
  241 FRKIWVMALC VTCVFAVTLS VFPAITINTK PSGFFEGKDH IFVPLCSFLV FNVMDWIGRS 300
  301 LTSCLQWPSM KSRLFPIFVL SRVVFIPALM LCNVQPRNYL PVVFNHDMAY IIFMSLFAIS 360
  361 NGYLACLSMS YAPQLVRPKD AETAGALMTF FLALGLSLGA AFSFGLKSLL SGKSN