YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55956972
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVPGFLALG GRRIRQIQRA MQNAKVTLLC LFVTVLVLRG TIGAGKFGTP EQDFNEIREH  60
   61 LIVGRRGEPH RVLTEVVAES SNNKTPPVVE EEVEEPDVER DPSVPYSFGP KISDWDDQRS 120
  121 EWLAENPAFP NFLPGGRPRI LLVTGSAPAP CESPVGDHLL LKSIKNKIDY CRLHGIEIFY 180
  181 NMAHLDHEMS GFWAKLPLIR KLMLTHPEVE FIWWMDSDAM FTDMVFELPF ERYKNHNFIM 240
  241 HGWEELVYNR KNWIGLNTGS FLLRNCQWSL DILDAWAPMG PKGKIRTEAG KLLTRSLVGR 300
  301 PEFEADDQSA LVYLLITQRE KWGDKVYLES AYYLHGYWGI LVDKYEEMME KHHPGLGDHR 360
  361 WPLVTHFVGC KPCGKVGDYP VAQCLRQMER AFNFGDNQIL QIYGFTHKSL SSRGVKRTRN 420
  421 DTDKPLEVKD ELGLLHPAFK AVKV

Type	Start	End	Confidence
Signal Peptide	1	43	0.81
N-region	1	34
H-region	35	40
C-region	41	43
Cleavage Site	43	44
Non-Cytoplasmic	44	444	0.99