YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55956970
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDWCFGARR VRQMQRAFRH GKITLMCLLM TVVVLRGTIG AGKFGTPGQD FNEIREHFHN  60
   61 RKRVEPHRVL EEAEVSTESS ESNNYATFDI SKLTVDEGED EKPDPNRPYS LGPKISDWDE 120
  121 QRAEWLRKNP NFPNFIGPNK PRVLLVTGSS PKPCENPGGD HYLLKAIKNK IDYCRLHGVE 180
  181 IFYNMALLDA EMAGFWAKLP LIRKLLLSHP EIEFLWWMDS DAMFTDMAFE VPWERYKDHN 240
  241 FVMHGWNEMV YDQKNWIGLN TGSFLLRNCQ WALDILDAWA PMGPKGKIRT EAGKILTREL 300
  301 KDRPVFEADD QSAMVYLLAT QRDNWGDKVY LESAYYLHGY WGILVDRYEE MIENHHPGLG 360
  361 DHRWPLVTHF VGCKPCGKFG DYPVERCLKQ MDRAFNFGDN QILQIYGFTH KSLASRRVKR 420
  421 TRNDPSNPLE VKDDLGLLHP AFKAVKVLFS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.53
Transmembrane Helix	21	41	0.53
Non-Cytoplasmic	42	450	0.99