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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HSDL2_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPNTGKLAG CTVFITGASR GIGKAIALKA AKDGANIVIA AKTTQRHPKL LGTIYTAAEE  60
   61 IEAAGGKALP CVVDVRDEQQ INSAVEKAVE RFGGIDILVN NASAISLTNT LETPTKRVDL 120
  121 MMSVNTRGTY LTSKACIPFL KKSKVAHILN LSPPLNLNPM WFKQHCAYTI AKYGMSMCVL 180
  181 GMAEEFRGEI AVNALWPRTA IHTAAMDMLG GAGVESQCRK VDIIADAAYS IFKRPKSFTG 240
  241 NFIIDENILK EEGIKDFDIY AITPGHPLLP DFFLDEHPDA VMEEKESYDP VPEVKEEKLQ 300
  301 LQEQPQLQEQ PQLQEKPQLQ EQPQLQEKPQ LQEQPQLQEQ PQLQEQPQQQ PQLQEQPQLQ 360
  361 EKPQLQEQPQ QQEKPQPQQQ PQQQPQQRPQ QRPQPQPQPQ PLLQSVLPPK PHFGAVEETF 420
  421 RIVKDSLSDE VVRATQAVYQ FELSGEDGGT WFLDLKSKGG KVGHGEPSDR ADVVMSMATE 480
  481 DFVKMFSGKL KPTMAFMSGK LKIKGNIALA IKLEKLMTHM NSRL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle