YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|59933274, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLARKGLLPD GFLLTRLAED AQPSRIRPKS QRARFITKSG SCNVAHKNIR EQGRFLQDVF  60
   61 TTMVDLKWQH SLLIFTSAFL CSWMLFAMVW WLLAFAHGDL EPRDPNEPGP VPCVTSIHSF 120
  121 TSAFLFSIEV QVTIGFGGRM VTEECPLAII VLIIQNILGL IINAIMLGCV FMKTAQANRR 180
  181 AETLIFSRNA VIAPRNGRPT LMFRVGDLRK SMIISANIQL QVIRRTVTAE GEVIPVCQLD 240
  241 IQVENPLRSN GIFLVSPLII SHTIDRGSPL YELSAQSMAT EDLEIIVILE GVVETTGITM 300
  301 QARTSYIPEE ILWGRRFVSI MTEEDGRYSV DYSKFGNTVP VRMPALSAKE LDQTRGVQDS 360
  361 GPHEGKPQGW GLVRAGRGGY RRGGARACDD TAAKPWYVPA EKEEEKKGQK KTVKLEEIGR 420
  421 EIEEETTEDM SD

Type	Start	End	Confidence
Cytoplasmic	1	71	0.92
Transmembrane Helix	72	94	0.93
Non-Cytoplasmic	95	116	0.84
Transmembrane Helix	117	137	0.65
Cytoplasmic	138	146	0.56
Transmembrane Helix	147	172	0.85
Non-Cytoplasmic	173	432	0.68