YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56129488, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.87
Transmembrane Helix	7	26	0.89
Non-Cytoplasmic	27	37	0.83
Transmembrane Helix	38	56	0.97
Cytoplasmic	57	70	0.87
Transmembrane Helix	71	91	0.94
Non-Cytoplasmic	92	99	0.77
Transmembrane Helix	100	120	0.93
Cytoplasmic	121	128	0.88
Transmembrane Helix	129	148	0.95
Non-Cytoplasmic	149	156	0.73
Transmembrane Helix	157	177	0.91
Cytoplasmic	178	189	0.77
Transmembrane Helix	190	211	0.87
Non-Cytoplasmic	212	216	0.80
Transmembrane Helix	217	237	0.92
Cytoplasmic	238	247	0.76
Transmembrane Helix	248	268	0.88
Non-Cytoplasmic	269	280	0.80
Transmembrane Helix	281	300	0.94
Cytoplasmic	301	321	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQQAGIGIL LALTTAMCWG ALPIAMKQVL EVMEPSTIVF YRFLMASIGL GAILAVKRKL  60
   61 PPLRIFRKPR WLVLLAIATC GLFGNFILFS SSLQYLSPTA SQVIGQLSSV GMMVASVFIL 120
  121 KEKMRGTQVI GALMLLSGLV MFFNTSLIEI FTRLTDYTWG VIFGVGAAMV WVSYGVAQKV 180
  181 LLRRLASQQI LFLLYTLCTI ALLPLAKPMV IAQLSDWQLA CLIFCGLNTL VGYGALAEAM 240
  241 ARWQAAQVSA IITLTPLFTL LFSDLLSMAW PDFFARPMLN LLGYLGAFVV VAGAMYSAIG 300
  301 HRIWGGLRKH ETVVSQPRSG E