YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56709038, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	40	0.95
Non-Cytoplasmic	41	52	0.73
Transmembrane Helix	53	72	0.90
Cytoplasmic	73	78	0.75
Transmembrane Helix	79	96	0.95
Non-Cytoplasmic	97	103	0.69
Transmembrane Helix	104	125	0.92
Cytoplasmic	126	140	0.73
Transmembrane Helix	141	159	0.87
Non-Cytoplasmic	160	172	0.80
Transmembrane Helix	173	193	0.95
Cytoplasmic	194	223	0.94
Transmembrane Helix	224	245	0.91
Non-Cytoplasmic	246	254	0.69
Transmembrane Helix	255	273	0.92
Cytoplasmic	274	278	0.75
Transmembrane Helix	279	298	0.90
Non-Cytoplasmic	299	302	0.76
Transmembrane Helix	303	323	0.91
Cytoplasmic	324	345	0.94
Transmembrane Helix	346	368	0.91
Non-Cytoplasmic	369	375	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTTTNLQS KTLMERLEPY LAIIGPMVMI FAILLFMGVA EPARYFRLSN LNLILLDAAL  60
   61 YMPMAMAMTF VITQRGIDLS IGSIAALSGI LMAFLIKQYG FPAWVAMPLA IVLGATMGLI 120
  121 NGLIITRFKV PDLIGTLAMD LVYRGLALVI AKGLVLARFP DLITEMGRGQ IPGFIPVPVV 180
  181 IGLLTMALGY WALTRTHFGR YTISIGSNPE ASEMTGIAVD RHKIYAYVLM GASAALAGVM 240
  241 LTGKLNAIQA TSAPYFNLHV IAAVVVGGTS LFGGRASMLG SLAGVLLLSM MINALVTLRI 300
  301 EFFWQSVASG AVIVSSVALY TWMQKKDRDG SRSLLAGLRT SEAQKLMKFS ALLIGLLILL 360
  361 LAVGAGLATD PKPTG