YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56708965, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYADTVLGF ARIARAKAEH LNADPLGFVI LTLKAGAYVG AGILLIFSVG QGVDASIRPI  60
   61 VMGASFGIAL TLVVFAGAEL FTGHTMYMMH GVLTGRASIR DLARCWCASW AGNLAGAILL 120
  121 AAIFVIGGGG LILAAGDEAL LYKVAAKKMH GTAPELFAKA ILCNWLVCLA LWTSARARDD 180
  181 VTKCVLIFWC LYAFIAAGFE HSVANMTVFS VALLSNHPDG ISIAGAIWNL TWVTLGNTFA 240
  241 GAVIMGFGYW GAASRPSFSD TGIEKSAHGK PE

Type	Start	End	Confidence
Cytoplasmic	1	25	0.87
Transmembrane Helix	26	49	0.83
Non-Cytoplasmic	50	59	0.76
Transmembrane Helix	60	85	0.81
Cytoplasmic	86	105	0.80
Transmembrane Helix	106	135	0.79
Non-Cytoplasmic	136	155	0.89
Transmembrane Helix	156	175	0.91
Cytoplasmic	176	184	0.83
Transmembrane Helix	185	204	0.92
Non-Cytoplasmic	205	229	0.79
Transmembrane Helix	230	251	0.90
Cytoplasmic	252	272	0.92