YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680508, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METFSLGVVL FTLIVIALVG VILMARSRLV STGNVNITIN GEKTISVPAG GKLLQTLAAE  60
   61 KLFVPSACGG GGTCAQCRVK IHSGGGSILP TEESHITKRE AACGDRLSCQ VAVKQDMDIE 120
  121 VPEEVFGVKK WRCKVRSNDN VATFIKALVL ELPEGENVNF RAGGYIQIEA PAHQLAYTDF 180
  181 DVQDEYREDW DRFNLWQYKS VVNEPVERAY SMANYPEEKG IIMLNVRVAS PPPGSSDIPA 240
  241 GKMSSYIFNL KPGDEVTISG PFGEFFARDT DKEMVFIGGG AGMAPMRSHI FDQLKRLKSK 300
  301 RKISFWYGAR SKKEMFFVED FDMLAAENPN FEWHVALSDA QPEDDWKGYT GFIHNVLFEE 360
  361 YLKNHPAPED CEFYMCGPPI MNQSVINMLL ELGVDREDIM LDDFGG

Type	Start	End	Confidence
Signal Peptide	1	25	0.66
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	406	0.94