YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56708819, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.97
Transmembrane Helix	56	73	0.96
Non-Cytoplasmic	74	81	0.71
Transmembrane Helix	82	104	0.64
Cytoplasmic	105	117	0.59
Transmembrane Helix	118	140	0.88
Non-Cytoplasmic	141	159	0.73
Transmembrane Helix	160	182	0.84
Cytoplasmic	183	192	0.67
Transmembrane Helix	193	211	0.70
Non-Cytoplasmic	212	255	0.82
Transmembrane Helix	256	277	0.91
Cytoplasmic	278	285	0.75
Transmembrane Helix	286	305	0.95
Non-Cytoplasmic	306	314	0.87
Transmembrane Helix	315	334	0.94
Cytoplasmic	335	344	0.81
Transmembrane Helix	345	363	0.95
Non-Cytoplasmic	364	370	0.78
Transmembrane Helix	371	390	0.95
Cytoplasmic	391	402	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLRNFFDRI EPNFTKGGKY EKLFPIYEMV ESFIYTPKTV TTAAPHARSY VDMKRIMTYV  60
   61 VIATIPAILW GMWNTGYQAN SAIAMLGADA ATGWRIAILQ ALGISLDAAN PLANVAHGFL 120
  121 YFLPIYLTTL IVGGIWEVVF ATVRGHEVNE GFLVTSMLYT LIMPASAPLW QVALGISFGV 180
  181 VIGKEVFGGT GKNFLNPALV GRAFLYFAYP ANMSGDSVWT PVDGFSGATA LAVSAADGYQ 240
  241 QLATNGITWM DAFYGTIQGS FGETSTLACL IGLAFLLMTK IANWRLIVGS MAGMIGFSLL 300
  301 LNVIGSDSNP MFAMPWYWHL VLGGYAFGLA FMVTEPVSAS HTNTGRYIYG ALIGVMVVLI 360
  361 RVINPAFPEG MMLAILFGNV FAPLIDYFVV QANIKRRARR HV