YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57167495, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.60
Transmembrane Helix	11	30	0.75
Cytoplasmic	31	35	0.63
Transmembrane Helix	36	55	0.86
Non-Cytoplasmic	56	61	0.75
Transmembrane Helix	62	85	0.82
Cytoplasmic	86	96	0.81
Transmembrane Helix	97	129	0.81
Non-Cytoplasmic	130	144	0.54
Transmembrane Helix	145	171	0.84
Cytoplasmic	172	183	0.55
Transmembrane Helix	184	208	0.90
Non-Cytoplasmic	209	227	0.57
Transmembrane Helix	228	262	0.76
Cytoplasmic	263	272	0.75
Transmembrane Helix	273	291	0.87
Non-Cytoplasmic	292	301	0.74
Transmembrane Helix	302	325	0.86
Cytoplasmic	326	333	0.80
Transmembrane Helix	334	355	0.91
Non-Cytoplasmic	356	363	0.84
Transmembrane Helix	364	386	0.91
Cytoplasmic	387	391	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQSVIDPQG LIDLKILIVI ALCLLFSPHI AKILRLPLSA TEIILGAIIA YFGFIGKSEN  60
   61 FALLANVGFY YLMFIAGMEV NLRAFFNMDK EIAKKSFFYI FLLYALSSLI VWIFGLSLVF 120
  121 VIIIPVMSVG LLSLLFKDFG KECYWLNIAM IVATLAEVIS IVLLTIAGAF LREGTGIIDV 180
  181 AQSILYLNIF LGLCLLGFKM LGVLFWWYPQ LKVVLMPWED KNEKDIRFCM AIFILIIVAM 240
  241 VITKLEIVLG SFIAGSFIAT FFDHKKDLEH KLSTFGHGFL IPIFFIHIGS TFDLKMILDY 300
  301 KIVLQAFLLM FVMVGLRILC ASVFLKRIGF KNMILFGLSH SMPLTLLIAT ATLGYSGKVI 360
  361 DEKLYSALIL TALFEAIIVM SMIKFLSNSK K