YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57167385, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.90
Transmembrane Helix	5	24	0.92
Cytoplasmic	25	29	0.90
Transmembrane Helix	30	52	0.91
Non-Cytoplasmic	53	72	0.92
Transmembrane Helix	73	96	0.90
Cytoplasmic	97	104	0.86
Transmembrane Helix	105	124	0.92
Non-Cytoplasmic	125	130	0.79
Transmembrane Helix	131	150	0.94
Cytoplasmic	151	162	0.90
Transmembrane Helix	163	182	0.91
Non-Cytoplasmic	183	202	0.79
Transmembrane Helix	203	222	0.89
Cytoplasmic	223	237	0.74
Transmembrane Helix	238	256	0.89
Non-Cytoplasmic	257	267	0.78
Transmembrane Helix	268	290	0.92
Cytoplasmic	291	297	0.86
Transmembrane Helix	298	320	0.86
Non-Cytoplasmic	321	326	0.66
Transmembrane Helix	327	345	0.92
Cytoplasmic	346	362	0.87
Transmembrane Helix	363	383	0.93
Non-Cytoplasmic	384	397	0.88
Transmembrane Helix	398	420	0.90
Cytoplasmic	421	440	0.85
Transmembrane Helix	441	459	0.97
Non-Cytoplasmic	460	478	0.87
Transmembrane Helix	479	500	0.93
Cytoplasmic	501	575	0.98
Transmembrane Helix	576	595	0.94
Non-Cytoplasmic	596	596	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNLALISLF SPFVAFLFAS CFALSEKKQF VGIFCSLLVA LSTFCSLYLL FCNEAFNVSL  60
   61 FEWFAGVNFG FDIDAISLTM MSIVGIVATC VHFYSIFYMA HDEGFNKFFA YLGLFVFSML 120
  121 FLVMSDNFLG LFVGWEGVGL CSWLLIGFWY KNDTYSFAAN EAFIMNRIAD LGMLLGIFWL 180
  181 YLQAGTLKYD EVFSMAQSLD HNALILIATC LFIGAMGKSA QFPFHTWLAD AMAGPTPVSA 240
  241 LIHAATMVTA GVYLVIRAST LYDLVPEVSY IIALLGAFVA IFAASMALVV RDLKRIIAYS 300
  301 TLSQLGYMFV AAGLGAYGIA LFHLATHAFF KSLLFLGAGN VMHAMNDKLD IKKMGGLFKP 360
  361 LKITAILMCI GSLALAGIYP FAGFFSKDLI LGYSFISFHH GIFLVLLIAA FLTAFYSFRL 420
  421 LMLVFFTPAR HDEHPNEASK IALLAMSPLM VLAIIAGFFE HSFFEYLSTK LVFIDAQNQI 480
  481 VMICASVAAI LGVILAIFAY KNSWFKESIE ENKIHKLLSN DYFIPRFYHQ FIVSKYESLC 540
  541 AILKHCDLYI FDRIVEKIAL YSQNISQKMI MPNSLNLMLR FLVAAFVILL ILVWMV