YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NUON_CAMJR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.78
Transmembrane Helix	13	35	0.87
Cytoplasmic	36	41	0.65
Transmembrane Helix	42	62	0.90
Non-Cytoplasmic	63	79	0.75
Transmembrane Helix	80	99	0.95
Cytoplasmic	100	107	0.71
Transmembrane Helix	108	124	0.90
Non-Cytoplasmic	125	127	0.46
Transmembrane Helix	128	147	0.69
Cytoplasmic	148	158	0.62
Transmembrane Helix	159	181	0.92
Non-Cytoplasmic	182	202	0.71
Transmembrane Helix	203	227	0.84
Cytoplasmic	228	234	0.65
Transmembrane Helix	235	259	0.77
Non-Cytoplasmic	260	265	0.77
Transmembrane Helix	266	287	0.92
Cytoplasmic	288	294	0.77
Transmembrane Helix	295	315	0.87
Non-Cytoplasmic	316	322	0.80
Transmembrane Helix	323	345	0.90
Cytoplasmic	346	364	0.82
Transmembrane Helix	365	386	0.91
Non-Cytoplasmic	387	400	0.82
Transmembrane Helix	401	420	0.95
Cytoplasmic	421	439	0.79
Transmembrane Helix	440	460	0.95
Non-Cytoplasmic	461	462	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNNFLNLEL LNISLSYPFL FLITTAIVLL LCSGFWKFHR SFYIGISSLS LIVSAFLILN  60
   61 NANAQGLEAK AFLATLNNDI VSFYASLVIL CFSFLYLLMQ KEENQGEFYA LFLFMIASLL 120
  121 LMVSSSNLVL IFIGLESSSL ALYTLIAMRG SDNAISSAIK YFSIAAVGAG FFVMAVAFIY 180
  181 LKTGTLDLSA NLALKNEFQK DPMLLGAGVM IFVLCAIKLS LAPFHFWLKD VYYAAHTNLV 240
  241 AFISVVPKVA MLVVVIRLFD FLNNTGFEYI IIVLAIFSML IGAFAALSQN NIKKMFAYSS 300
  301 VVHSSLVLIA CIPLLKEQNF DGILLAIFGY WTLFAFANYA VFMILSNYEN NSYESLNGLL 360
  361 VKKPLIAFCL SISVLSLAGI PPFGVFWGKF MILNTVILNG YWYLALFVAL SSVIMLYAYL 420
  421 KILIHVLFMK NDRVYNIKFS FIQNFILAFC VCVSIFAILL ML