YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57238557, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYIFDGFKQ ALFLLFNADE SVISAIKTTL LSSSISIVLA LLIGFPLGFI LGFFDFKIKR  60
   61 FIKLIIDTSL SFPTVAVGLI LYALISSRGP LGEFGLLFTI KALILGQFIL ALPIVIALFS 120
  121 NLIENMNKKH FLLIKSFHLS PLKLVLTMIY ELRFALISVV ALAYGRIVAE VGVAMIVGGN 180
  181 IKYDTRTITT AISLETNKGE FASGIALALV LILIAFCLNF ITHKLKRT

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.81
Transmembrane Helix	33	54	0.91
Cytoplasmic	55	63	0.84
Transmembrane Helix	64	85	0.92
Non-Cytoplasmic	86	101	0.81
Transmembrane Helix	102	123	0.92
Cytoplasmic	124	143	0.91
Transmembrane Helix	144	168	0.78
Non-Cytoplasmic	169	200	0.91
Transmembrane Helix	201	222	0.93
Cytoplasmic	223	228	0.89