YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57238525, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.88
Transmembrane Helix	8	29	0.92
Cytoplasmic	30	38	0.91
Transmembrane Helix	39	62	0.76
Non-Cytoplasmic	63	75	0.69
Transmembrane Helix	76	96	0.92
Cytoplasmic	97	126	0.97
Transmembrane Helix	127	149	0.87
Non-Cytoplasmic	150	164	0.81
Transmembrane Helix	165	183	0.94
Cytoplasmic	184	193	0.70
Transmembrane Helix	194	213	0.94
Non-Cytoplasmic	214	234	0.88
Transmembrane Helix	235	255	0.89
Cytoplasmic	256	273	0.86
Transmembrane Helix	274	297	0.93
Non-Cytoplasmic	298	323	0.91
Transmembrane Helix	324	347	0.89
Cytoplasmic	348	367	0.94
Transmembrane Helix	368	389	0.94
Non-Cytoplasmic	390	398	0.84
Transmembrane Helix	399	420	0.92
Cytoplasmic	421	426	0.82
Transmembrane Helix	427	447	0.91
Non-Cytoplasmic	448	453	0.88
Transmembrane Helix	454	474	0.93
Cytoplasmic	475	489	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVVQINTPI AVMFVVYALL MLYIGFYFYK QNKNSEDYFL GGRTMGPVIS ALSAGASDMS  60
   61 GWLLMGLPGA LYVSGFIDSY IAIGLTIGAS LNWIFVAKRL RIYTSVIANS LTIPDYFETR 120
  121 FDDDKHILRI VCAVVILIFF TFYVSSGLVS GAKLFESTFG IRYDYALTTG TIIIVAYTFL 180
  181 GGYKAVCWTD MIQGLLMMIA LIIVPLVMLY HLGGFGEAMN IVKEIKPQAL SMGEGVGVIS 240
  241 IISALAWGLG YFGQPHILVR FMSIRSTKDI PMATFIGIAW MAVCLLSACM IGILGIAYVH 300
  301 KFELSLQDPE KIFIVMSQLL FNPWIAGILL SAILAAIMST ASSQLLVSSS TIAEDFYKKI 360
  361 FREDAPSHIV LNLGKLGVLL VAVIAFLIST DKNSSVLSIV SYAWAGFGAS FGSVMLFSLF 420
  421 WSRMTRVGAI LGMITGAATV VLWKNFANSG LYEIVPGFLA ASAVIIIASL FTNVRSGTKA 480
  481 AYEKMLKEL