YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57238413, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.79
Transmembrane Helix	17	33	0.93
Non-Cytoplasmic	34	44	0.66
Transmembrane Helix	45	66	0.89
Cytoplasmic	67	73	0.67
Transmembrane Helix	74	94	0.84
Non-Cytoplasmic	95	99	0.69
Transmembrane Helix	100	120	0.93
Cytoplasmic	121	130	0.82
Transmembrane Helix	131	152	0.92
Non-Cytoplasmic	153	166	0.86
Transmembrane Helix	167	186	0.87
Cytoplasmic	187	188	0.71
Transmembrane Helix	189	208	0.86
Non-Cytoplasmic	209	243	0.72
Transmembrane Helix	244	268	0.73
Cytoplasmic	269	288	0.89
Transmembrane Helix	289	311	0.83
Non-Cytoplasmic	312	322	0.77
Transmembrane Helix	323	343	0.91
Cytoplasmic	344	349	0.74
Transmembrane Helix	350	367	0.92
Non-Cytoplasmic	368	384	0.69
Transmembrane Helix	385	408	0.87
Cytoplasmic	409	417	0.86
Transmembrane Helix	418	438	0.93
Non-Cytoplasmic	439	439	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFKLKENN TSFKTEVIAG LTTFLAMVYI IPVNSSIVGN TGMPIEALIT ATALITIVAS  60
   61 AFNAFFANTP VAMSVGMGLN AYFTFAVCLG QNIAWQSALG AVFISSIIFL ILSFTHFRLW 120
  121 VIRNIPKDLR LAICAGIGCF IAFLGLSQMG VIMHNKDTLV SIGNFKSPHV LFGIFTLALI 180
  181 IFFWAIKLLG AFILGVLASS IIAWIFHLDN ASFPVQIFSW PNFSMENGLG AIFLQLDIKS 240
  241 ALNITMIPII LTFFITQLFD SIGTITGVGE RGKIFDDPKN GEKKLSKTLM ADATGSALGA 300
  301 MTGTSTVTAF VESTTGVESG GRTGLTALVV AICFAFTLFL LPLFKAIPAN AIYPVLVMVG 360
  361 ILMFMEVKNI DFKDSAIAVA SFFTIIMMPF TYSITTGFAF GFLSYLLVRI FKREWDKINL 420
  421 GIIVLSLLSL GNFLLMALQ