YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57167080, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILLIGMTN SGIGFKAFSG GLLEKILAKS TDTKIKSILF GTLSTLIMQS STLVSIITIS  60
   61 FLSAGLISLG AGIGIIFGAN LGNTASSWLI VGLTNIKISM LAIPLLIIGV LFFFQKDSVL 120
  121 KGLGNIFIGI GFFFLGVDYI KSGFENFKHI IDLSRFDFAG FKGVFVFLGL GALLTGVIQS 180
  181 STATMAIIVA ALLAGQISLE NSLAATLGTS VGGVVTAVLA SLSTNIEGKK LAFASCIFNF 240
  241 GIAFLIVLIF PYFIHFLNFL SIVLNIEDIA LKVALFHTLF NLIGVVLFSF FTPQIVLFLN 300
  301 KIVKAPKDKN KDKPLYLDSS LVKFSDTAIE ALRKESEHLY NNTYAIVAHA IGFSRKDIQS 360
  361 DKSFKEILEN KKWFSKNVDL DYLYQTRIKV LFEAIIDFST KAQVYINDET KNHKIFTFKM 420
  421 AAKNLAETTK NLKIIQANIK KYSSSSNEFL ALEYNKIRSN LGELLRSIEE LRVVEDREKL 480
  481 YLIIKNLQKG KEILKEIDTL TLSNVEHLIS VRKITTAEGI SILNDTTFAA KIAEELIDAV 540
  541 EVMFSKDISN

Type	Start	End	Confidence
Cytoplasmic	1	37	0.76
Transmembrane Helix	38	59	0.72
Non-Cytoplasmic	60	60	0.45
Transmembrane Helix	61	84	0.79
Cytoplasmic	85	92	0.57
Transmembrane Helix	93	114	0.89
Non-Cytoplasmic	115	121	0.65
Transmembrane Helix	122	142	0.89
Cytoplasmic	143	160	0.76
Transmembrane Helix	161	194	0.77
Non-Cytoplasmic	195	202	0.72
Transmembrane Helix	203	223	0.93
Cytoplasmic	224	232	0.72
Transmembrane Helix	233	255	0.90
Non-Cytoplasmic	256	273	0.82
Transmembrane Helix	274	298	0.82
Cytoplasmic	299	550	0.87