YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57237673, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.70
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.69
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	36	0.66
Transmembrane Helix	37	51	0.47
Cytoplasmic	52	52	0.09
Transmembrane Helix	53	71	0.65
Non-Cytoplasmic	72	105	0.50
Transmembrane Helix	106	128	0.83
Cytoplasmic	129	185	0.56
Transmembrane Helix	186	208	0.85
Non-Cytoplasmic	209	236	0.70
Transmembrane Helix	237	254	0.89
Cytoplasmic	255	302	0.94
Transmembrane Helix	303	323	0.91
Non-Cytoplasmic	324	357	0.92
Transmembrane Helix	358	376	0.95
Cytoplasmic	377	390	0.85
Transmembrane Helix	391	413	0.87
Non-Cytoplasmic	414	434	0.82
Transmembrane Helix	435	465	0.75
Cytoplasmic	466	527	0.55
Transmembrane Helix	528	546	0.69
Non-Cytoplasmic	547	551	0.54
Transmembrane Helix	552	573	0.84
Cytoplasmic	574	577	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFLVSLFL PLVAFANSSE AAANANLFGA FTLIPPLVAI ALAFITKDVI LSLFTGVLSG  60
   61 TFLLSLSANI FKAQHLTFVN YYNTTVESFS KIISYILGST SDPVNAGIIL QILCIGGLVA 120
  121 LITKMGGAKA VALKFAKRAK SAVSAQVNTW FLGLLIFFDD YANLLIVGPI MRPLADKFKI 180
  181 SREKFAFIID STAAPVAGIA VISTWIGLEV SLIKTAYEHI GISNISAFGI FVETIPYRFY 240
  241 NIFMLFFVVM TAIMRREFGS MYKAEVRART TGQIAPLPKS GTLDTTELED QFLAPKEGIK 300
  301 IRAFDAIVPI FTLIILAILG FYFNGLSTLE GEELAKASAN PLSFETFRAA FGNADSSVVL 360
  361 FQAALFAAIV AIFIGVRRKI FNLKEAVETW IYGWKTMIFT IVLLLFAWSL SSIVKDLGTS 420
  421 LFITSLLADK LPEFILPATI FAFASAISFA IGTSYGTMGI LMPLAVPLAH EIAKINGMDA 480
  481 NAMHHYMVIN ISCVLTGAIF GNHCSPISDN VILSSMSAKC DHMEHVRTQI PYALFICGIS 540
  541 LIAGYIPVSL GLSVWFVLPL NFILIALLLR LIGKKVP